Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACAM22_RS02560 Genome accession   NZ_AP028929
Coordinates   578664..579896 (+) Length   410 a.a.
NCBI ID   WP_369606906.1    Uniprot ID   -
Organism   Streptococcus sp. SN-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 573664..584896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS02525 (MASAN616_04930) metA 573961..574905 (+) 945 WP_023943671.1 homoserine O-succinyltransferase -
  ACAM22_RS02530 (MASAN616_04940) - 574914..575591 (+) 678 WP_261050477.1 DnaD domain-containing protein -
  ACAM22_RS02535 (MASAN616_04950) tpiA 575689..576447 (+) 759 WP_000087893.1 triose-phosphate isomerase -
  ACAM22_RS02540 (MASAN616_04960) - 576485..577042 (-) 558 WP_261050475.1 transposase -
  ACAM22_RS02545 (MASAN616_04970) - 577302..577820 (+) 519 WP_050280517.1 DNA starvation/stationary phase protection protein -
  ACAM22_RS02550 (MASAN616_04980) - 577951..578457 (+) 507 WP_261050471.1 dihydrofolate reductase -
  ACAM22_RS02555 - 578457..578627 (+) 171 WP_130897099.1 hypothetical protein -
  ACAM22_RS02560 (MASAN616_04990) clpX 578664..579896 (+) 1233 WP_369606906.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACAM22_RS02565 (MASAN616_05000) yihA 579905..580492 (+) 588 WP_000422605.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACAM22_RS02570 (MASAN616_05010) - 580503..580883 (+) 381 WP_001140420.1 RidA family protein -
  ACAM22_RS02575 (MASAN616_05020) rapZ 580935..581825 (+) 891 WP_261050469.1 RNase adapter RapZ -
  ACAM22_RS02580 (MASAN616_05030) - 581822..582799 (+) 978 WP_261050468.1 YvcK family protein -
  ACAM22_RS02585 (MASAN616_05040) whiA 582796..583707 (+) 912 WP_004262315.1 DNA-binding protein WhiA -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45712.21 Da        Isoelectric Point: 4.4240

>NTDB_id=107318 ACAM22_RS02560 WP_369606906.1 578664..579896(+) (clpX) [Streptococcus sp. SN-1]
MPTTRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTSARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=107318 ACAM22_RS02560 WP_369606906.1 578664..579896(+) (clpX) [Streptococcus sp. SN-1]
ATGCCTACAACTAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCAGGCAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGAGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTACCAAAACCAATCGAACTCCTCCATATCTTGAACCACTATGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCAGTTTACAACCACTACAAACGTATCAATTTCCACGATACGCGTGAAGAGTCGGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTAATGATTGGCCCAACTGGTTCAGGGAAGACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCGATTGCGGATGCAACAGCTCTTACTGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCAGATTTTAATATCGAGCGCGCAGAGCGTGGGATTATCTACGTGGATGAAATTGA
CAAGATTGCTAAGAAGAGCGAGAACGTCTCGATCACACGTGACGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTATTGCTAGTGTGCCACCTCAAGGTGGACGCAAGCATCCACAACAAGAGATGATTCAAGTGGATACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGTATTGAAGAAATCGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAACAAGGCAATTGACGAAAATAGCTCATACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TCGGTATTATCCCTGAATTGATTGGACGTTTGCCTGTCTTTGCTGCTCTTGAACAGTTGACAGTAGATGATTTGGTTCGT
ATCTTGAAAGAGCCAAGAAATGCCTTGGTAAAACAATACCAAACCTTGTTATCTTATGATGATGTTGAGTTAGAATTTGA
TGATGAAGCCCTTCAAGAGATTGCTAATAAGGCCATCGAACGCAAAACTAGTGCGCGTGGTCTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment