Detailed information NTG1073134

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI511_RS06760
• Genome accession: NZ_CP173610
• Coordinates: 1534100..1534945 (+)
• Length: 281 a.a.
• NCBI ID: WP_116361980.1
• Uniprot ID: -
• Organism: Pectobacterium versatile strain M22b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1529100..1539945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI511_RS06730 (ACI511_06740)	gspI	1529511..1529876 (+)	366	WP_211005769.1	type II secretion system minor pseudopilin GspI	-
ACI511_RS06735 (ACI511_06745)	gspJ	1529876..1530526 (+)	651	WP_095700114.1	type II secretion system minor pseudopilin GspJ	-
ACI511_RS06740 (ACI511_06750)	gspK	1530523..1531509 (+)	987	WP_010302966.1	type II secretion system minor pseudopilin GspK	-
ACI511_RS06745 (ACI511_06755)	gspL	1531506..1532783 (+)	1278	WP_211005770.1	type II secretion system protein GspL	-
ACI511_RS06750 (ACI511_06760)	gspM	1532780..1533274 (+)	495	WP_103971574.1	type II secretion system protein GspM	-
ACI511_RS06755 (ACI511_06765)	-	1533264..1534010 (+)	747	WP_405078043.1	type II secretion system protein N	-
ACI511_RS06760 (ACI511_06770)	pilD	1534100..1534945 (+)	846	WP_116361980.1	A24 family peptidase	Machinery gene
ACI511_RS06765 (ACI511_06775)	ypdK	1535106..1535180 (-)	75	WP_099606229.1	membrane protein YpdK	-
ACI511_RS06770 (ACI511_06780)	-	1535537..1536562 (-)	1026	WP_103862229.1	LLM class flavin-dependent oxidoreductase	-
ACI511_RS06775 (ACI511_06785)	-	1536914..1537978 (+)	1065	WP_405078044.1	ABC transporter substrate-binding protein	-
ACI511_RS06780 (ACI511_06790)	-	1537975..1539012 (+)	1038	WP_405078045.1	FecCD family ABC transporter permease	-
ACI511_RS06785 (ACI511_06795)	-	1539014..1539784 (+)	771	WP_039492233.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31348.24 Da
• Isoelectric Point: 7.0813

>NTDB_id=1073134 ACI511_RS06760 WP_116361980.1 1534100..1534945(+) (pilD) [Pectobacterium versatile strain M22b]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADSDRDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEDTAKPLAFGPWLAMGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=1073134 ACI511_RS06760 WP_116361980.1 1534100..1534945(+) (pilD) [Pectobacterium versatile strain M22b]
ATGGACGATTTAAGGGAATTCGCACAGCTGTTTCCAGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGCTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATTCCGATCGTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAACAGGCTATT
GCGGTCAAAGATAATATCCCGCTATTCAGCTGGTTGTGGCTGCGAGGCCGCTCCCGCTGCTGTCATCAATCGGTCTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATCCTGTTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCGGGGACATTTGTTTCATTGAACGATGCCGTAGTCGGCGC
GATGGCGGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCCACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCCGCGTTGAGC
GGTCTGGTCGTTACTCTCATCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGTTAGCTTTTGGCCCCTGGCTGGC
AATGGGTGGCGTGTTTGGTGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.554	96.441	0.488
pilD	Vibrio campbellii strain DS40M4	46.125	96.441	0.445
pilD	Neisseria gonorrhoeae MS11	46.36	92.883	0.431
pilD	Acinetobacter baumannii D1279779	43.223	97.153	0.42
pilD	Acinetobacter nosocomialis M2	42.857	97.153	0.416