Detailed information NTG0107253

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RE428_RS05005
• Genome accession: NZ_AP028878
• Coordinates: 1096110..1097495 (-)
• Length: 461 a.a.
• NCBI ID: WP_004580880.1
• Uniprot ID: -
• Organism: Marinobacter nanhaiticus D15-8W
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1091110..1102495

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RE428_RS04990 (RE428_10030)	-	1091196..1094750 (+)	3555	WP_004580877.1	PilC/PilY family type IV pilus protein	-
RE428_RS04995 (RE428_10040)	-	1094772..1095281 (+)	510	WP_004580878.1	type IV pilin protein	-
RE428_RS05000 (RE428_10050)	-	1095355..1096011 (+)	657	WP_004580879.1	GspH/FimT family pseudopilin	-
RE428_RS05005 (RE428_10060)	pilR	1096110..1097495 (-)	1386	WP_004580880.1	sigma-54 dependent transcriptional regulator	Regulator
RE428_RS05010 (RE428_10070)	-	1097547..1099178 (-)	1632	WP_004580881.1	ATP-binding protein	-
RE428_RS05015 (RE428_10080)	-	1099323..1100978 (+)	1656	WP_004580882.1	NAD+ synthase	-
RE428_RS05020 (RE428_10090)	-	1100998..1101825 (-)	828	WP_004580883.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50763.20 Da
• Isoelectric Point: 4.7706

>NTDB_id=107253 RE428_RS05005 WP_004580880.1 1096110..1097495(-) (pilR) [Marinobacter nanhaiticus D15-8W]
MSTPTALIIDDEPDIRELLEITLARMGIEVETAADITTAKRLLEANPPQLCLTDMNLPDGNGIELVHWIQKVCPQTPVAV
ITAYGSMDTAIESLKAGAFDFVSKPVELPRLRELVQSALKLSEPDVEEMPADDPGLLLGQSEGVRRLRNQTRKLARSQAP
VFISGESGSGKELVARMIHLQGPRRDGPFVAVNCGAIPSELMESEFFGHKKGSFTGAVDNKAGLFRSADGGTLFLDEVAD
LPLNMQVKLLRAIQEKAVRPVGDSKEVPVDIRILSATHRDLPALVQEGTFRQDLFYRINVIELKVPPLRERPDDIELLSR
HILERLARDYECEPAQLTPAALNKLKDHAFPGNVRELENILERAFTLCDLDQIDAADLHLGSAPVPGGSSNISEAIIPNE
APSLDLPEDGELDLENYLESIERKAIEKALEATRWNKTAAAKKLGISFRALRYKLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=107253 RE428_RS05005 WP_004580880.1 1096110..1097495(-) (pilR) [Marinobacter nanhaiticus D15-8W]
ATGAGTACTCCAACTGCGCTGATCATCGACGACGAACCGGACATTCGCGAATTACTGGAGATTACGCTTGCACGCATGGG
CATCGAGGTGGAAACGGCTGCCGACATCACTACGGCGAAGCGTCTGCTTGAAGCCAATCCGCCCCAACTCTGCCTGACGG
ACATGAACCTGCCTGACGGCAACGGCATCGAGCTGGTCCATTGGATCCAGAAAGTGTGCCCGCAAACACCGGTCGCAGTG
ATCACCGCCTATGGGAGCATGGATACCGCCATTGAGTCGCTGAAGGCCGGCGCCTTCGATTTCGTATCAAAGCCCGTGGA
GCTGCCAAGGCTACGCGAACTGGTACAAAGTGCGCTCAAGCTTTCCGAGCCGGATGTCGAGGAGATGCCCGCAGATGATC
CCGGGCTCCTTCTCGGACAGTCAGAAGGCGTGCGGCGGTTGCGCAACCAGACCCGCAAGCTCGCGCGCAGCCAGGCCCCC
GTCTTCATCAGTGGCGAGTCCGGCAGCGGGAAGGAGCTGGTGGCGCGCATGATCCACCTGCAAGGCCCTCGGCGTGATGG
TCCGTTCGTGGCCGTCAACTGTGGCGCCATCCCCTCCGAACTGATGGAAAGCGAGTTTTTCGGGCATAAGAAAGGCAGCT
TCACCGGCGCCGTCGACAACAAAGCCGGCCTTTTCCGGTCCGCCGATGGCGGCACACTCTTCCTCGATGAGGTTGCCGAC
CTGCCACTCAACATGCAGGTCAAACTCCTGCGCGCGATCCAGGAGAAAGCGGTTCGGCCAGTGGGCGATTCCAAGGAAGT
GCCGGTGGATATCCGAATCCTTAGCGCTACACATCGGGATCTCCCAGCGCTGGTACAAGAAGGCACCTTCCGCCAGGACC
TGTTCTACCGGATCAACGTCATCGAGCTGAAAGTACCGCCACTCAGGGAGCGCCCTGACGATATCGAATTGCTCTCGCGT
CATATCCTGGAGCGCTTGGCTCGCGACTACGAATGCGAGCCCGCGCAGCTTACACCAGCCGCGCTGAACAAACTCAAGGA
TCACGCGTTTCCAGGCAATGTGCGCGAGCTGGAGAACATCCTGGAGCGAGCGTTCACCCTTTGCGACCTGGACCAGATCG
ATGCAGCGGATTTGCACCTGGGTAGCGCGCCAGTGCCCGGTGGCTCGTCAAACATCTCTGAGGCGATAATACCCAATGAG
GCGCCGTCTCTGGATCTGCCAGAAGATGGCGAGCTTGATTTGGAGAACTATCTGGAATCTATCGAGCGTAAGGCGATCGA
GAAGGCACTGGAAGCCACGCGCTGGAACAAGACGGCTGCGGCGAAGAAGTTAGGGATCAGTTTCAGGGCTTTGCGGTATA
AGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (418-458)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.363	100	0.646
pilR	Acinetobacter baumannii strain A118	51.717	100	0.523