Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACI5EZ_RS08615 | Genome accession | NZ_CP173428 |
| Coordinates | 1794701..1795081 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836909.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CRAB_1 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1789701..1800081
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI5EZ_RS08585 | kdsB | 1790604..1791365 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACI5EZ_RS08590 | - | 1791377..1792357 (+) | 981 | WP_001075419.1 | DNA polymerase III subunit delta' | - |
| ACI5EZ_RS08595 | - | 1792369..1792710 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACI5EZ_RS08600 | - | 1792728..1793501 (+) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| ACI5EZ_RS08605 | - | 1793539..1794147 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACI5EZ_RS08610 | - | 1794157..1794711 (+) | 555 | WP_000841372.1 | type II secretion system protein | - |
| ACI5EZ_RS08615 | xcpV | 1794701..1795081 (+) | 381 | WP_000836909.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACI5EZ_RS08620 | xcpW | 1795081..1795782 (+) | 702 | WP_000594588.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACI5EZ_RS08625 | gspK | 1795782..1796741 (+) | 960 | WP_001218621.1 | type II secretion system minor pseudopilin GspK | - |
| ACI5EZ_RS08630 | - | 1796971..1797567 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ACI5EZ_RS08635 | ung | 1797618..1798331 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| ACI5EZ_RS08640 | - | 1798328..1799452 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACI5EZ_RS08645 | tadA | 1799459..1799962 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13991.24 Da Isoelectric Point: 9.8004
>NTDB_id=1072299 ACI5EZ_RS08615 WP_000836909.1 1794701..1795081(+) (xcpV) [Acinetobacter baumannii strain CRAB_1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1072299 ACI5EZ_RS08615 WP_000836909.1 1794701..1795081(+) (xcpV) [Acinetobacter baumannii strain CRAB_1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |