Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACI5EZ_RS08620 Genome accession   NZ_CP173428
Coordinates   1795081..1795782 (+) Length   233 a.a.
NCBI ID   WP_000594588.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAB_1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1790081..1800782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5EZ_RS08585 kdsB 1790604..1791365 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACI5EZ_RS08590 - 1791377..1792357 (+) 981 WP_001075419.1 DNA polymerase III subunit delta' -
  ACI5EZ_RS08595 - 1792369..1792710 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  ACI5EZ_RS08600 - 1792728..1793501 (+) 774 WP_000497301.1 TatD family hydrolase -
  ACI5EZ_RS08605 - 1793539..1794147 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ACI5EZ_RS08610 - 1794157..1794711 (+) 555 WP_000841372.1 type II secretion system protein -
  ACI5EZ_RS08615 xcpV 1794701..1795081 (+) 381 WP_000836909.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACI5EZ_RS08620 xcpW 1795081..1795782 (+) 702 WP_000594588.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACI5EZ_RS08625 gspK 1795782..1796741 (+) 960 WP_001218621.1 type II secretion system minor pseudopilin GspK -
  ACI5EZ_RS08630 - 1796971..1797567 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ACI5EZ_RS08635 ung 1797618..1798331 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  ACI5EZ_RS08640 - 1798328..1799452 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ACI5EZ_RS08645 tadA 1799459..1799962 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  ACI5EZ_RS08650 - 1800032..1800475 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26625.55 Da        Isoelectric Point: 9.3468

>NTDB_id=1072300 ACI5EZ_RS08620 WP_000594588.1 1795081..1795782(+) (xcpW) [Acinetobacter baumannii strain CRAB_1]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQDGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1072300 ACI5EZ_RS08620 WP_000594588.1 1795081..1795782(+) (xcpW) [Acinetobacter baumannii strain CRAB_1]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATACCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGACGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment