Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACI5EZ_RS01700 Genome accession   NZ_CP173428
Coordinates   342200..343060 (-) Length   286 a.a.
NCBI ID   WP_001152269.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAB_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337200..348060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5EZ_RS01675 - 338092..339402 (+) 1311 WP_404976800.1 tetratricopeptide repeat protein -
  ACI5EZ_RS01680 - 339479..339805 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ACI5EZ_RS01685 rlmB 339907..340656 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACI5EZ_RS01690 - 340691..341605 (+) 915 WP_000075015.1 DMT family transporter -
  ACI5EZ_RS01695 coaE 341602..342198 (-) 597 WP_031957987.1 dephospho-CoA kinase -
  ACI5EZ_RS01700 pilD 342200..343060 (-) 861 WP_001152269.1 A24 family peptidase Machinery gene
  ACI5EZ_RS01705 pilC 343060..344286 (-) 1227 WP_000279215.1 type II secretion system F family protein Machinery gene
  ACI5EZ_RS01710 pilB 344316..346028 (-) 1713 WP_031957988.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACI5EZ_RS01715 tpiA 346319..347113 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  ACI5EZ_RS01720 secG 347126..347455 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32029.45 Da        Isoelectric Point: 6.6663

>NTDB_id=1072284 ACI5EZ_RS01700 WP_001152269.1 342200..343060(-) (pilD) [Acinetobacter baumannii strain CRAB_1]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1072284 ACI5EZ_RS01700 WP_001152269.1 342200..343060(-) (pilD) [Acinetobacter baumannii strain CRAB_1]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.601

100

0.986
  pilD Acinetobacter nosocomialis M2

98.252

100

0.983
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437

Multiple sequence alignment