Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACI2O8_RS18685 Genome accession   NZ_CP173415
Coordinates   3581381..3582103 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain FJYA24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3576381..3587103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS18650 (ACI2O8_18650) fliW 3576520..3576951 (-) 432 WP_029725990.1 flagellar assembly protein FliW -
  ACI2O8_RS18655 (ACI2O8_18655) yviE 3576972..3577547 (-) 576 WP_014481045.1 DUF6470 family protein -
  ACI2O8_RS18660 (ACI2O8_18660) flgL 3577594..3578490 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ACI2O8_RS18665 (ACI2O8_18665) flgK 3578501..3580024 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ACI2O8_RS18670 (ACI2O8_18670) flgN 3580043..3580525 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ACI2O8_RS18675 (ACI2O8_18675) flgM 3580541..3580807 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACI2O8_RS18680 (ACI2O8_18680) yvyF 3580888..3581307 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACI2O8_RS18685 (ACI2O8_18685) comFC 3581381..3582103 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  ACI2O8_RS18690 (ACI2O8_18690) comFB 3582067..3582363 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACI2O8_RS18695 (ACI2O8_18695) comFA 3582423..3583814 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  ACI2O8_RS18700 (ACI2O8_18700) fakBA 3583920..3584765 (-) 846 WP_003227986.1 DegV family protein -
  ACI2O8_RS18705 (ACI2O8_18705) degU 3584863..3585552 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACI2O8_RS18710 (ACI2O8_18710) degS 3585635..3586792 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=1072129 ACI2O8_RS18685 WP_029725992.1 3581381..3582103(-) (comFC) [Bacillus subtilis strain FJYA24]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1072129 ACI2O8_RS18685 WP_029725992.1 3581381..3582103(-) (comFC) [Bacillus subtilis strain FJYA24]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment