Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACI2O8_RS16775 Genome accession   NZ_CP173415
Coordinates   3195275..3195919 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain FJYA24     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3190275..3200919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS16740 (ACI2O8_16740) mrpB 3191465..3191896 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ACI2O8_RS16745 (ACI2O8_16745) mrpC 3191896..3192237 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACI2O8_RS16750 (ACI2O8_16750) mrpD 3192230..3193711 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  ACI2O8_RS16755 (ACI2O8_16755) mrpE 3193717..3194193 (+) 477 WP_128422372.1 Na+/H+ antiporter subunit E -
  ACI2O8_RS16760 (ACI2O8_16760) mrpF 3194193..3194477 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACI2O8_RS16765 (ACI2O8_16765) mnhG 3194461..3194835 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ACI2O8_RS16770 (ACI2O8_16770) yuxO 3194876..3195256 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  ACI2O8_RS16775 (ACI2O8_16775) comA 3195275..3195919 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACI2O8_RS16780 (ACI2O8_16780) comP 3196000..3198300 (-) 2301 WP_088300729.1 histidine kinase Regulator
  ACI2O8_RS16785 (ACI2O8_16785) comX 3198312..3198476 (-) 165 WP_015384519.1 competence pheromone ComX -
  ACI2O8_RS16790 (ACI2O8_16790) - 3198489..3199349 (-) 861 WP_128422373.1 polyprenyl synthetase family protein -
  ACI2O8_RS16795 (ACI2O8_16795) degQ 3199534..3199674 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACI2O8_RS16800 (ACI2O8_16800) - 3199896..3200021 (+) 126 WP_144500545.1 hypothetical protein -
  ACI2O8_RS16805 (ACI2O8_16805) - 3200135..3200503 (+) 369 WP_144500544.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1072124 ACI2O8_RS16775 WP_003220716.1 3195275..3195919(-) (comA) [Bacillus subtilis strain FJYA24]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1072124 ACI2O8_RS16775 WP_003220716.1 3195275..3195919(-) (comA) [Bacillus subtilis strain FJYA24]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment