Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACI3L8_RS10200 Genome accession   NZ_CP173391
Coordinates   2211867..2212484 (-) Length   205 a.a.
NCBI ID   WP_404971384.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206867..2217484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS10190 (ACI3L8_10190) aceF 2207959..2209881 (+) 1923 WP_404971383.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  ACI3L8_RS10195 (ACI3L8_10195) lpdA 2210125..2211555 (+) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  ACI3L8_RS10200 (ACI3L8_10200) opaR 2211867..2212484 (-) 618 WP_404971384.1 transcriptional regulator OpaR Regulator
  ACI3L8_RS10205 (ACI3L8_10205) hpt 2212806..2213336 (+) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  ACI3L8_RS10210 (ACI3L8_10210) can 2213423..2214091 (-) 669 WP_005531727.1 carbonate dehydratase -
  ACI3L8_RS10215 (ACI3L8_10215) - 2214375..2216045 (+) 1671 WP_404971385.1 SulP family inorganic anion transporter -
  ACI3L8_RS10220 (ACI3L8_10220) - 2216285..2217202 (+) 918 WP_045381649.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23748.06 Da        Isoelectric Point: 6.2211

>NTDB_id=1072032 ACI3L8_RS10200 WP_404971384.1 2211867..2212484(-) (opaR) [Vibrio campbellii strain LB3]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLP
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1072032 ACI3L8_RS10200 WP_404971384.1 2211867..2212484(-) (opaR) [Vibrio campbellii strain LB3]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCGGATATTGCTGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGCCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

99.512

0.951
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment