Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACI3L5_RS08580 Genome accession   NZ_CP173389
Coordinates   1888254..1889795 (-) Length   513 a.a.
NCBI ID   WP_404972941.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883254..1894795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS08560 (ACI3L5_08560) - 1883269..1884690 (-) 1422 WP_404972939.1 lipopolysaccharide biosynthesis protein -
  ACI3L5_RS08565 (ACI3L5_08565) - 1884683..1885855 (-) 1173 WP_399424788.1 glycosyltransferase family 4 protein -
  ACI3L5_RS08570 (ACI3L5_08570) - 1885866..1887050 (-) 1185 WP_005427592.1 glycosyltransferase -
  ACI3L5_RS08575 (ACI3L5_08575) - 1887203..1888279 (-) 1077 WP_404972940.1 glycosyltransferase -
  ACI3L5_RS08580 (ACI3L5_08580) luxO 1888254..1889795 (-) 1542 WP_404972941.1 sigma-54-dependent transcriptional regulator Regulator
  ACI3L5_RS08585 (ACI3L5_08585) - 1890006..1890389 (-) 384 WP_045398545.1 Hpt domain-containing protein -
  ACI3L5_RS08590 (ACI3L5_08590) - 1890402..1891091 (-) 690 WP_005427760.1 AAA family ATPase -
  ACI3L5_RS08595 (ACI3L5_08595) - 1891091..1893193 (-) 2103 WP_404972942.1 SLBB domain-containing protein -
  ACI3L5_RS08600 (ACI3L5_08600) - 1893190..1894044 (-) 855 WP_047479347.1 OmpA family protein -
  ACI3L5_RS08605 (ACI3L5_08605) - 1894070..1894390 (-) 321 WP_005427675.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57500.43 Da        Isoelectric Point: 6.1664

>NTDB_id=1071965 ACI3L5_RS08580 WP_404972941.1 1888254..1889795(-) (luxO) [Vibrio campbellii strain LB10]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIEHNKPQLIILDLKLPDMSGEDVLDWINENEVPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLLTYAKQDKKKFKHIGNDVQHVIKNYDWPGNVRQLQNIIRNIVVLNDEDKVTLPHLPVQLTRKPKKTPSVSPA
NAESVKETSFITEQTDSVQNEAFPTSEPASATYSFSDPENQPTISGAQRASVYFNSDGTIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=1071965 ACI3L5_RS08580 WP_404972941.1 1888254..1889795(-) (luxO) [Vibrio campbellii strain LB10]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGATGAACCTTA
CGACATCTTCCACGTTGAAACTGGACGTGAGGCGATTCAATTCATTGAGCACAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGTGAAGACGTTCTTGATTGGATTAATGAGAATGAGGTTCCAACCTCTGTCATCATAGCA
ACGGCGCATGGTAGCGTTGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAACCCATCAATGC
CGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGTCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CCCACCTCAGCTAGCGTGTTTATCGTTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCCGAAGCGGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGTGATTTAATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTTACTGGCGCGACCACCGATCGTAAAGGCGCAGCGACCCTTGCCCATGGCGGCACACTATTCTTG
GACGAACTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAGGTCGATGTTCGTATTATCTGTGCAACCAACCGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTTCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCACGCTAGCAAAGCACTTTTTGCTCACTTATGCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAAAACTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAACATCATTCGTAACATTGTTGTATTAAATG
ATGAAGATAAGGTCACGCTACCGCACTTGCCTGTTCAACTGACTCGTAAGCCGAAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGAGAGCGTAAAAGAAACGAGCTTCATTACCGAACAAACCGACTCCGTGCAGAATGAAGCCTTCCCAACCTCGGA
GCCAGCAAGCGCCACCTATTCTTTCTCTGATCCTGAAAACCAACCAACTATCTCTGGAGCACAAAGGGCTTCAGTCTATT
TTAATTCAGACGGCACCATTCGTCCGATGTGGAAAGTCGAACGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGT
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCTTCAACGGTCTACCGCAAAAAACAAGCGTGGGAAGCAGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481

Multiple sequence alignment