Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACI3L7_RS10845 Genome accession   NZ_CP173387
Coordinates   2362127..2363548 (-) Length   473 a.a.
NCBI ID   WP_404969660.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2357127..2368548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS10820 (ACI3L7_10820) - 2357803..2358453 (+) 651 WP_005427918.1 thiopurine S-methyltransferase -
  ACI3L7_RS10825 (ACI3L7_10825) purT 2358540..2359715 (-) 1176 WP_404969657.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACI3L7_RS10830 (ACI3L7_10830) cdd 2359863..2360750 (-) 888 WP_404969658.1 cytidine deaminase -
  ACI3L7_RS10835 (ACI3L7_10835) - 2361015..2361692 (-) 678 WP_005428010.1 LrgB family protein -
  ACI3L7_RS10840 (ACI3L7_10840) - 2361694..2362068 (-) 375 WP_404969659.1 CidA/LrgA family protein -
  ACI3L7_RS10845 (ACI3L7_10845) sbcB 2362127..2363548 (-) 1422 WP_404969660.1 exodeoxyribonuclease I Machinery gene
  ACI3L7_RS10850 (ACI3L7_10850) - 2363710..2364390 (-) 681 WP_404969661.1 DUF1826 domain-containing protein -
  ACI3L7_RS10855 (ACI3L7_10855) - 2364618..2365991 (-) 1374 WP_404969662.1 L-cystine transporter -
  ACI3L7_RS10860 (ACI3L7_10860) - 2366185..2366880 (-) 696 WP_404969663.1 NAD(P)H-binding protein -
  ACI3L7_RS10865 (ACI3L7_10865) - 2367546..2368157 (+) 612 WP_404969664.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54582.93 Da        Isoelectric Point: 4.9878

>NTDB_id=1071936 ACI3L7_RS10845 WP_404969660.1 2362127..2363548(-) (sbcB) [Vibrio campbellii strain LB135]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGKPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHEELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1071936 ACI3L7_RS10845 WP_404969660.1 2362127..2363548(-) (sbcB) [Vibrio campbellii strain LB135]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTAAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCAGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGAAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTCATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGATGTTATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGCGAGCTGCTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTTGCGCCTGCTAAGACTCTAACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTCTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTGATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAGACGGATCCGAACAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAGCAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.858

100

0.789

Multiple sequence alignment