Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | ACIX90_RS06945 | Genome accession | NZ_CP173319 |
| Coordinates | 1498919..1499467 (-) | Length | 182 a.a. |
| NCBI ID | WP_117374039.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae strain APL2401251E | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1493919..1504467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIX90_RS06930 (ACIX90_06930) | - | 1494403..1494924 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| ACIX90_RS06935 (ACIX90_06935) | - | 1495029..1496315 (+) | 1287 | WP_012263161.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACIX90_RS06940 (ACIX90_06940) | - | 1496505..1498844 (-) | 2340 | WP_404810937.1 | Tex family protein | - |
| ACIX90_RS06945 (ACIX90_06945) | pilF | 1498919..1499467 (-) | 549 | WP_117374039.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| ACIX90_RS06950 (ACIX90_06950) | - | 1499521..1500702 (-) | 1182 | WP_404810938.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| ACIX90_RS06975 (ACIX90_06975) | gltX | 1501606..1503045 (+) | 1440 | WP_404810939.1 | glutamate--tRNA ligase | - |
| ACIX90_RS06985 (ACIX90_06985) | yefM | 1503383..1503634 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| ACIX90_RS06990 (ACIX90_06990) | - | 1503631..1503891 (+) | 261 | WP_237611416.1 | Txe/YoeB family addiction module toxin | - |
| ACIX90_RS06995 (ACIX90_06995) | - | 1504050..1504217 (-) | 168 | WP_404810940.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20629.27 Da Isoelectric Point: 6.9479
>NTDB_id=1071549 ACIX90_RS06945 WP_117374039.1 1498919..1499467(-) (pilF) [Actinobacillus pleuropneumoniae strain APL2401251E]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=1071549 ACIX90_RS06945 WP_117374039.1 1498919..1499467(-) (pilF) [Actinobacillus pleuropneumoniae strain APL2401251E]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACGTTTAATCGCTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCATGATCAAAACGACTACTTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACGTTTAATCGCTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCATGATCAAAACGACTACTTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
65.957 |
100 |
0.681 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.199 |
93.956 |
0.434 |