Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | ACIX3D_RS06890 | Genome accession | NZ_CP173318 |
| Coordinates | 1502828..1503376 (-) | Length | 182 a.a. |
| NCBI ID | WP_117374039.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae strain APL2210214E | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1497828..1508376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIX3D_RS06875 (ACIX3D_06880) | - | 1498312..1498833 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| ACIX3D_RS06880 (ACIX3D_06885) | - | 1498938..1500224 (+) | 1287 | WP_005598292.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACIX3D_RS06885 (ACIX3D_06890) | - | 1500414..1502753 (-) | 2340 | WP_005598295.1 | Tex family protein | - |
| ACIX3D_RS06890 (ACIX3D_06895) | pilF | 1502828..1503376 (-) | 549 | WP_117374039.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| ACIX3D_RS06895 (ACIX3D_06900) | - | 1503430..1504611 (-) | 1182 | WP_005598300.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| ACIX3D_RS06920 (ACIX3D_06925) | gltX | 1505515..1506954 (+) | 1440 | WP_005598316.1 | glutamate--tRNA ligase | - |
| ACIX3D_RS06930 (ACIX3D_06935) | yefM | 1507291..1507542 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| ACIX3D_RS06935 (ACIX3D_06940) | - | 1507539..1507799 (+) | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | - |
| ACIX3D_RS06940 (ACIX3D_06945) | - | 1507958..1508125 (-) | 168 | WP_005598320.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20629.27 Da Isoelectric Point: 6.9479
>NTDB_id=1071521 ACIX3D_RS06890 WP_117374039.1 1502828..1503376(-) (pilF) [Actinobacillus pleuropneumoniae strain APL2210214E]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=1071521 ACIX3D_RS06890 WP_117374039.1 1502828..1503376(-) (pilF) [Actinobacillus pleuropneumoniae strain APL2210214E]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGGATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGGATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
65.957 |
100 |
0.681 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.199 |
93.956 |
0.434 |