Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACHZES_RS06385 Genome accession   NZ_CP173277
Coordinates   1354996..1356840 (-) Length   614 a.a.
NCBI ID   WP_395548740.1    Uniprot ID   -
Organism   Lacrimispora sp. HJ-01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349996..1361840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZES_RS06360 - 1350084..1350920 (-) 837 WP_395548745.1 hypothetical protein -
  ACHZES_RS06365 - 1350974..1352710 (-) 1737 WP_395548744.1 hypothetical protein -
  ACHZES_RS06370 - 1352902..1353429 (-) 528 WP_395548743.1 hypothetical protein -
  ACHZES_RS06375 - 1353605..1354330 (-) 726 WP_395548742.1 LytR/AlgR family response regulator transcription factor -
  ACHZES_RS06380 - 1354644..1354847 (-) 204 WP_395548741.1 hypothetical protein -
  ACHZES_RS06385 rcrQ 1354996..1356840 (-) 1845 WP_395548740.1 ABC transporter ATP-binding protein Regulator
  ACHZES_RS06390 rcrP 1356837..1358597 (-) 1761 WP_395548739.1 ABC transporter ATP-binding protein Regulator
  ACHZES_RS06395 - 1358720..1359154 (-) 435 WP_286173552.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHZES_RS06400 - 1359434..1359637 (+) 204 WP_395548738.1 hypothetical protein -
  ACHZES_RS06405 - 1359726..1360970 (-) 1245 WP_395548894.1 cation:proton antiporter -
  ACHZES_RS06410 - 1360970..1361581 (-) 612 WP_154525752.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67639.60 Da        Isoelectric Point: 7.4169

>NTDB_id=1071379 ACHZES_RS06385 WP_395548740.1 1354996..1356840(-) (rcrQ) [Lacrimispora sp. HJ-01]
MSEQRTNRKPMAGGPMGQGAVEKPKDFKKTWGKLIAYCKNYMPAVIAALVMAAIGTVLQIIGPDKLKDMTNEIMKGLPSL
INGVPVAGAIDFGIVKSIALLLVALYTGSALLNFIQSFMMATVTQKISKNMRTGISQKINKLPLKYFDRVSYGDILSRVT
NDVDTIGQTMNQSIGNLVTSVTMLVGTAIMMFYNNWIMALTAVGSSILGFVIMGVIMSKSQKYFVQQQEDLGVANGHIEE
VYSGHNVVKAYNGGKEARCFFENVNESLYNSGWKSQFMSGLMMPLMTFIGNFGYVAVCVVGAALAMNGTISFGVIVAFML
YIRLFTQPLSQIAQAFQNLQRTAAASERVFEFFDEEELSDESQKVKKLTNVKGDVEFRHVKFGYTQEKTIINDFSTQIKA
GQKIAIVGPTGAGKTTMVNLLMRFYELDGGEILLDGIPISQVPRENVHEQFCMVLQDTWLFEGTIKENIIYSKPGVTDEQ
VVAACKAVGLHHFIRTLPQGYDTLLNDRASLSQGQKQLVTIARAMIQNAPMLILDEATSSVDTRTEILIQEAMDKLTVGR
TSFVIAHRLSTIKNADLILVMKDGDIIESGNHKELLEKGGFYAELYNSQFEPAA

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=1071379 ACHZES_RS06385 WP_395548740.1 1354996..1356840(-) (rcrQ) [Lacrimispora sp. HJ-01]
ATGAGTGAACAAAGAACGAACAGAAAGCCGATGGCTGGAGGTCCTATGGGACAGGGGGCTGTCGAAAAGCCAAAAGATTT
TAAAAAGACATGGGGAAAACTGATTGCCTATTGTAAAAATTATATGCCTGCAGTAATTGCCGCTCTTGTTATGGCGGCAA
TCGGAACGGTGCTGCAAATCATCGGCCCGGATAAACTGAAAGATATGACCAACGAGATTATGAAAGGATTACCTTCGTTG
ATCAATGGCGTTCCGGTTGCTGGTGCGATTGATTTTGGTATAGTAAAAAGCATTGCATTACTGTTGGTGGCATTATACAC
AGGTTCAGCGCTCCTCAACTTTATTCAAAGTTTTATGATGGCAACTGTAACACAAAAAATAAGCAAAAATATGCGTACCG
GTATATCACAAAAAATCAATAAGCTGCCTTTGAAATATTTTGACCGGGTAAGCTATGGTGATATTCTCAGCAGGGTGACC
AATGATGTGGATACCATCGGTCAGACCATGAACCAAAGCATCGGAAATCTGGTTACATCCGTTACCATGCTTGTGGGTAC
AGCAATTATGATGTTCTACAATAACTGGATTATGGCGTTAACTGCCGTAGGATCGAGTATTTTGGGGTTTGTTATCATGG
GTGTTATCATGTCAAAATCGCAGAAATATTTCGTTCAGCAGCAAGAAGATCTGGGTGTCGCTAATGGTCATATTGAAGAA
GTTTATTCCGGACATAATGTGGTAAAGGCTTATAACGGTGGAAAAGAGGCCAGATGTTTTTTTGAGAATGTAAACGAGAG
CCTGTATAACAGTGGCTGGAAGAGCCAGTTTATGTCCGGATTGATGATGCCGCTTATGACATTTATCGGTAACTTCGGAT
ATGTGGCAGTCTGTGTGGTAGGTGCGGCGCTGGCTATGAACGGTACCATAAGCTTCGGTGTGATCGTAGCCTTTATGTTG
TATATCCGCTTGTTTACCCAGCCGCTGTCACAAATTGCTCAGGCATTCCAGAACCTGCAAAGAACCGCTGCTGCCAGTGA
GCGCGTGTTTGAGTTCTTTGATGAGGAAGAGCTGTCTGACGAGAGTCAAAAAGTAAAGAAGCTCACCAATGTGAAAGGTG
ATGTGGAATTCCGTCATGTGAAGTTTGGATATACCCAAGAAAAAACGATTATCAATGACTTTTCAACTCAAATTAAAGCC
GGTCAGAAGATAGCCATTGTGGGACCGACCGGTGCAGGAAAAACAACAATGGTCAATCTGCTGATGCGTTTTTATGAACT
GGACGGTGGAGAAATATTGCTTGATGGCATTCCAATCAGCCAGGTGCCAAGAGAGAATGTCCATGAGCAATTTTGTATGG
TATTACAGGATACATGGCTTTTTGAAGGCACCATCAAGGAAAATATAATCTATAGCAAGCCGGGGGTGACTGATGAACAG
GTAGTTGCTGCTTGCAAGGCAGTAGGCCTTCATCATTTTATTAGAACTTTGCCGCAAGGGTATGACACATTGTTAAATGA
CAGGGCAAGTCTTTCACAGGGACAGAAACAGCTTGTTACGATTGCCAGAGCGATGATCCAAAACGCTCCCATGCTGATTC
TGGACGAAGCAACAAGTTCTGTGGACACACGCACCGAAATCTTGATTCAGGAAGCTATGGATAAGCTGACGGTAGGACGC
ACATCCTTTGTCATCGCACACCGCCTGTCCACCATCAAAAATGCAGACCTGATTCTGGTCATGAAAGATGGGGACATTAT
CGAAAGTGGTAATCATAAGGAACTGTTAGAAAAGGGAGGCTTCTATGCGGAACTTTACAACAGCCAGTTTGAACCTGCTG
CATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-329)

ABC transporter (ABC_tran)

(392-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.804

94.951

0.549

Multiple sequence alignment