Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACHZES_RS06390 Genome accession   NZ_CP173277
Coordinates   1356837..1358597 (-) Length   586 a.a.
NCBI ID   WP_395548739.1    Uniprot ID   -
Organism   Lacrimispora sp. HJ-01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1351837..1363597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZES_RS06370 - 1352902..1353429 (-) 528 WP_395548743.1 hypothetical protein -
  ACHZES_RS06375 - 1353605..1354330 (-) 726 WP_395548742.1 LytR/AlgR family response regulator transcription factor -
  ACHZES_RS06380 - 1354644..1354847 (-) 204 WP_395548741.1 hypothetical protein -
  ACHZES_RS06385 rcrQ 1354996..1356840 (-) 1845 WP_395548740.1 ABC transporter ATP-binding protein Regulator
  ACHZES_RS06390 rcrP 1356837..1358597 (-) 1761 WP_395548739.1 ABC transporter ATP-binding protein Regulator
  ACHZES_RS06395 - 1358720..1359154 (-) 435 WP_286173552.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHZES_RS06400 - 1359434..1359637 (+) 204 WP_395548738.1 hypothetical protein -
  ACHZES_RS06405 - 1359726..1360970 (-) 1245 WP_395548894.1 cation:proton antiporter -
  ACHZES_RS06410 - 1360970..1361581 (-) 612 WP_154525752.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64920.70 Da        Isoelectric Point: 6.3837

>NTDB_id=1071380 ACHZES_RS06390 WP_395548739.1 1356837..1358597(-) (rcrP) [Lacrimispora sp. HJ-01]
MIRIFKYLKPKEWLMALFSLIFVMVQVWLDLKSPDYMSEITMLVQTPGSAMSDIWLAGGKMLLCTLGSLASAVIVGYFAA
RIAAAFSKRLRSLLFNKVESFSMEEINRFSTDSLITRSTNDITQIQTLITMGLMLIIKAPIMAVWAITKIAGKGFEWSLA
TGAAVAILVVMIGIIMIFVIPKFKKMQSLTDNMNRVTRENLTGLRVVRAYNAENYQEKKFEEANEELTGTQLYTSRATAI
MMPVMNMIMSGLSLSIYWIGAYLINAAQMTDKLTLFSNMVVFSSYAMQVVMSFLMLVMIFIMLPRASVSAKRINEVLDTE
PTILDGSHTNGLPGLKGEVTFQHVGFKYPDAADYVLEDVNFTVKQGETIAFIGSTGSGKSTLINLVPRFFDATEGEILID
GVNIKEYTQEALHNKIGYVPQKAVLFKGSVSSNVAYGDNGDNGFSEHEIKKAVAIAQGTDFVERMEGGYEADIAQGGTNV
SGGQKQRLAIARAVCRKPEIYIFDDSFSALDYKTDRILRNVLKKETAGVTSMIVAQRIGTIMDADQIIVLDEGRVVGKGK
HKDLLQDCEVYRQIAMSQLSEEELVS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1071380 ACHZES_RS06390 WP_395548739.1 1356837..1358597(-) (rcrP) [Lacrimispora sp. HJ-01]
ATGATTAGAATATTTAAATATCTCAAGCCCAAAGAATGGCTGATGGCTTTATTTAGCTTGATATTTGTGATGGTCCAGGT
ATGGCTGGATTTAAAATCACCGGATTACATGTCAGAAATAACCATGTTAGTGCAAACGCCCGGTAGTGCGATGAGCGATA
TTTGGCTTGCTGGGGGTAAAATGCTTCTCTGCACACTCGGCAGTTTGGCAAGTGCTGTTATTGTTGGTTATTTTGCGGCA
CGGATTGCCGCCGCATTTTCTAAACGTCTGCGCAGTCTGCTTTTTAATAAAGTGGAATCCTTTTCCATGGAGGAAATCAA
CCGCTTTTCCACGGATAGCTTAATCACCCGTTCAACAAACGATATTACACAGATTCAGACTTTGATTACCATGGGATTAA
TGCTGATTATAAAAGCTCCGATTATGGCTGTATGGGCAATTACCAAAATCGCGGGAAAGGGTTTTGAATGGTCACTCGCC
ACAGGCGCGGCGGTTGCAATTCTGGTTGTAATGATTGGTATCATCATGATTTTTGTGATACCGAAATTTAAGAAAATGCA
ATCTTTAACAGATAACATGAACCGGGTTACCCGTGAAAATCTGACAGGACTTCGTGTAGTAAGAGCTTATAATGCCGAGA
ATTATCAAGAAAAGAAGTTTGAAGAAGCGAATGAAGAATTGACCGGTACCCAGTTATATACAAGCCGTGCTACGGCAATT
ATGATGCCGGTCATGAATATGATTATGAGTGGTCTGTCCCTTTCCATCTATTGGATCGGTGCCTATTTAATTAATGCGGC
CCAGATGACGGATAAACTGACGTTGTTTTCTAACATGGTGGTGTTCTCCAGCTATGCGATGCAGGTTGTTATGTCATTTT
TGATGTTAGTCATGATTTTCATCATGCTTCCCCGTGCCAGCGTTTCCGCCAAGCGAATCAATGAAGTGCTGGACACCGAG
CCTACAATCCTTGATGGCAGCCATACAAATGGACTCCCTGGATTGAAAGGTGAGGTTACGTTTCAACATGTGGGCTTCAA
ATATCCGGATGCGGCGGATTATGTGCTGGAGGATGTGAACTTTACGGTGAAACAGGGAGAAACGATTGCATTTATCGGCT
CCACAGGTAGTGGTAAATCAACGCTGATAAACCTTGTACCGCGCTTTTTTGATGCAACAGAGGGAGAAATCCTGATTGAC
GGTGTGAATATTAAGGAGTATACACAGGAGGCACTCCACAATAAGATTGGTTACGTGCCGCAGAAAGCGGTTCTATTCAA
GGGGTCGGTTTCGTCTAATGTGGCATACGGAGATAACGGTGACAATGGATTTTCTGAGCACGAAATCAAGAAAGCTGTTG
CAATTGCACAGGGAACGGATTTTGTTGAGCGTATGGAGGGTGGTTATGAAGCAGACATTGCCCAGGGCGGTACCAATGTG
TCTGGCGGGCAGAAACAGCGGCTTGCCATTGCCCGCGCGGTCTGTCGAAAGCCGGAAATCTATATATTTGATGATTCCTT
TTCCGCATTGGATTATAAGACGGATCGGATTTTGCGTAACGTACTGAAAAAAGAAACAGCAGGTGTGACCAGTATGATTG
TGGCACAGCGTATCGGCACGATTATGGATGCTGATCAGATAATCGTACTGGACGAAGGCAGAGTTGTGGGCAAAGGAAAA
CACAAGGATCTGCTGCAGGACTGTGAGGTATACAGGCAAATTGCCATGAGTCAGTTAAGTGAGGAGGAGCTTGTATCATG
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

54.866

100

0.558

Multiple sequence alignment