Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   ACIVJH_RS11220 Genome accession   NZ_CP173226
Coordinates   2148313..2148957 (-) Length   214 a.a.
NCBI ID   WP_003689466.1    Uniprot ID   Q5F6K3
Organism   Neisseria gonorrhoeae strain NCTC 8375 [B 5025]     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2143313..2153957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVJH_RS11185 ftsL 2143794..2144057 (-) 264 WP_003689461.1 cell division protein FtsL -
  ACIVJH_RS11190 rsmH 2144084..2145040 (-) 957 WP_003689462.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  ACIVJH_RS11195 mraZ 2145037..2145492 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  ACIVJH_RS11200 - 2145771..2147018 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  ACIVJH_RS11215 - 2147459..2148280 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  ACIVJH_RS11220 dsbA1 2148313..2148957 (-) 645 WP_003689466.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  ACIVJH_RS11225 ftsN 2148960..2149823 (-) 864 WP_010360712.1 cell division protein FtsN -
  ACIVJH_RS11230 comM 2149929..2151425 (-) 1497 WP_003693541.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACIVJH_RS11235 - 2151439..2151759 (-) 321 WP_047924292.1 accessory factor UbiK family protein -
  ACIVJH_RS11240 putP 2152247..2153773 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24003.07 Da        Isoelectric Point: 9.9225

>NTDB_id=1070885 ACIVJH_RS11220 WP_003689466.1 2148313..2148957(-) (dsbA1) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
MKFKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQPGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDTYLRTEH
VVWRPEMLGLARMAAAVKLSGLKYQANSAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAVALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1070885 ACIVJH_RS11220 WP_003689466.1 2148313..2148957(-) (dsbA1) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
ATGAAGTTTAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGCCGGGAAAAATTGAGGTTTTGGAATTTTTCGGCTATTTTTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATACTTATCTGCGGACGGAGCAC
GTGGTCTGGCGGCCTGAAATGCTCGGTCTGGCAAGAATGGCTGCTGCGGTCAAGCTGTCGGGTTTGAAATATCAGGCAAA
CTCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGTTTGGAAAACAGGGCTGTTGCCGGGAAATGGGCTTTATCTC
AAAAAGGTTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGTCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGATGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F6K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

52.688

86.916

0.458

Multiple sequence alignment