Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   ACIVJH_RS00570 Genome accession   NZ_CP173226
Coordinates   100910..101608 (-) Length   232 a.a.
NCBI ID   WP_003689902.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC 8375 [B 5025]     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 95910..106608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVJH_RS00555 - 96271..97272 (-) 1002 WP_003691902.1 peptidylprolyl isomerase -
  ACIVJH_RS00560 - 97374..99779 (-) 2406 WP_003698952.1 LPS-assembly protein LptD -
  ACIVJH_RS00565 amgK 99849..100853 (+) 1005 WP_003689901.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  ACIVJH_RS00570 dsbA1 100910..101608 (-) 699 WP_003689902.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  ACIVJH_RS00575 murJ 102046..103584 (+) 1539 WP_003694224.1 murein biosynthesis integral membrane protein MurJ -
  ACIVJH_RS00580 - 103717..104673 (+) 957 WP_003694227.1 YheT family hydrolase -
  ACIVJH_RS00585 trpC 104724..105506 (+) 783 WP_003689906.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25235.89 Da        Isoelectric Point: 5.6758

>NTDB_id=1070841 ACIVJH_RS00570 WP_003689902.1 100910..101608(-) (dsbA1) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAR
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARAGKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=1070841 ACIVJH_RS00570 WP_003689902.1 100910..101608(-) (dsbA1) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGACTGGTCGAAGGGCAAAACTACACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTGCTTGAGTTTTTCGGCTATTTTTGTCCGCACTGCGCCCGC
CTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGCCGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGAAAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCCCCCGAAAGTCAGGCGCGCGCCGGCAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGTGAAGAACAAAAAGCCGCGCAGTAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

97.845

100

0.978
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment