Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   ACIVIR_RS00290 Genome accession   NZ_CP173225
Coordinates   38176..38796 (-) Length   206 a.a.
NCBI ID   WP_050203505.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 262     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 33176..43796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVIR_RS00265 recA 33554..34720 (-) 1167 WP_054387479.1 recombinase RecA Machinery gene
  ACIVIR_RS00270 cinA 34775..36031 (-) 1257 WP_000642707.1 competence/damage-inducible protein A Machinery gene
  ACIVIR_RS00275 brpA 36115..37131 (-) 1017 WP_000239282.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACIVIR_RS00280 - 37139..37657 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  ACIVIR_RS00285 tsaE 37647..38090 (-) 444 WP_000288230.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACIVIR_RS00290 comM 38176..38796 (-) 621 WP_050203505.1 hypothetical protein Regulator
  ACIVIR_RS00295 - 39179..40042 (-) 864 WP_001844931.1 helix-turn-helix domain-containing protein -
  ACIVIR_RS00300 - 40231..40401 (+) 171 WP_000742180.1 PhrA family quorum-sensing system peptide -
  ACIVIR_RS00305 - 40851..42866 (+) 2016 WP_000732386.1 DUF1430 domain-containing protein -
  ACIVIR_RS00310 - 42868..43500 (+) 633 WP_000571415.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23534.68 Da        Isoelectric Point: 10.1254

>NTDB_id=1070767 ACIVIR_RS00290 WP_050203505.1 38176..38796(-) (comM) [Streptococcus pneumoniae strain 262]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPITI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1070767 ACIVIR_RS00290 WP_050203505.1 38176..38796(-) (comM) [Streptococcus pneumoniae strain 262]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATAACCATT
GTCTCACTTCTGATTTATATTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.515

100

0.995
  comM Streptococcus pneumoniae R6

99.515

100

0.995
  comM Streptococcus pneumoniae TIGR4

99.515

100

0.995
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369

Multiple sequence alignment