Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACIO6V_RS06790 Genome accession   NZ_CP173167
Coordinates   1350686..1352494 (-) Length   602 a.a.
NCBI ID   WP_404387459.1    Uniprot ID   -
Organism   Ligilactobacillus animalis strain D27     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1345686..1357494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO6V_RS06765 (ACIO6V_06765) mgtE 1346066..1347433 (-) 1368 WP_035449107.1 magnesium transporter -
  ACIO6V_RS06770 (ACIO6V_06770) - 1347449..1348345 (-) 897 WP_035449105.1 RluA family pseudouridine synthase -
  ACIO6V_RS06775 (ACIO6V_06775) - 1348323..1349141 (-) 819 WP_010689259.1 NAD kinase -
  ACIO6V_RS06780 (ACIO6V_06780) - 1349178..1349807 (-) 630 WP_035449116.1 GTP pyrophosphokinase family protein -
  ACIO6V_RS06785 (ACIO6V_06785) - 1350012..1350632 (+) 621 WP_404387457.1 DsbA family protein -
  ACIO6V_RS06790 (ACIO6V_06790) pepF 1350686..1352494 (-) 1809 WP_404387459.1 oligoendopeptidase F Regulator
  ACIO6V_RS06795 (ACIO6V_06795) - 1352533..1353507 (-) 975 WP_278506021.1 competence protein CoiA -
  ACIO6V_RS06800 (ACIO6V_06800) - 1353601..1354350 (-) 750 WP_010689265.1 adaptor protein MecA -
  ACIO6V_RS06805 (ACIO6V_06805) spxA 1354485..1354883 (-) 399 WP_029507336.1 transcriptional regulator SpxA -
  ACIO6V_RS06810 (ACIO6V_06810) nrdG 1355237..1355917 (-) 681 WP_010689268.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68206.03 Da        Isoelectric Point: 4.8816

>NTDB_id=1070377 ACIO6V_RS06790 WP_404387459.1 1350686..1352494(-) (pepF) [Ligilactobacillus animalis strain D27]
MSEVTRLPKRSEVALELTWDLTKIFATNAEFEVAFAQVAKAAEDFEQYKGTLGNSAQAFLAALTAMLELDRQLEVVYVYA
SMKNDEDTANAKYQALMARVQKLLADVSAKLAWFRPELLALAPEKLASYYQDEPKLNAYKTLIDDWTRLRAHVLSEKEEA
LLAGASDILGASANVFEVLNNADLKFPVVTDETGSKVELSNGVYGKLLESTARPVRREAFEQLYAVYKQFRHTFAATLSA
HVRKHNFSAKLRNYQSAKEASLAQNDIPVAVYDTLVKTVNENLGLLHEYVALRKDILGVDELHMYDMYTPLTGEPTLTFT
YKQAKKMTLEALSVLGEEYLAYVEKAFDERWIDVVANAGKRSGAYSGGAYDTAPYILLNWQDTLDNLFTLVHEMGHTMHS
YYTRTNQPYQYGDYSIFVAEIASTTNENLLTQYLLETQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEAWIHEQDASQV
PLTANLMSDFYGKLNQRYYGSAVENDPEIAYEWSRIPHFYYNFYVYQYATGFGAASTLAERVLDEEPAHTEAYLDYLKAG
SSAAPLEVMKKAGVDMTDSKYLEKAFGIFKERLAELKELLAK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1070377 ACIO6V_RS06790 WP_404387459.1 1350686..1352494(-) (pepF) [Ligilactobacillus animalis strain D27]
ATGAGTGAAGTAACACGTCTACCAAAAAGATCAGAGGTAGCACTCGAGCTTACTTGGGATCTGACCAAGATCTTTGCAAC
TAATGCAGAATTTGAAGTAGCCTTTGCGCAAGTAGCAAAAGCAGCTGAAGATTTTGAACAATATAAGGGAACACTAGGAA
ATAGCGCTCAAGCCTTTTTAGCTGCTCTAACGGCCATGCTCGAGTTAGATCGCCAACTTGAAGTAGTTTATGTCTATGCA
AGCATGAAAAACGATGAGGATACCGCTAATGCTAAGTACCAAGCTTTGATGGCACGGGTCCAAAAGTTATTAGCTGATGT
TTCAGCGAAATTAGCTTGGTTTCGACCTGAGTTATTAGCTTTAGCGCCAGAAAAATTAGCAAGCTATTATCAAGATGAAC
CTAAATTAAATGCATATAAAACTTTGATCGATGACTGGACTAGACTTCGAGCCCATGTCTTGAGTGAAAAAGAAGAAGCA
CTGTTAGCAGGTGCAAGCGATATTTTGGGCGCTTCAGCTAATGTTTTTGAAGTTTTAAACAATGCTGATCTAAAATTCCC
CGTAGTAACTGATGAAACGGGCTCAAAGGTCGAGCTTTCAAATGGGGTCTACGGTAAATTGCTCGAATCGACTGCGCGCC
CAGTTAGACGTGAAGCATTTGAACAGTTATATGCTGTATATAAACAGTTCAGACACACATTTGCAGCTACACTGTCGGCA
CATGTGCGTAAGCATAATTTTTCAGCTAAATTACGTAATTATCAAAGTGCCAAGGAAGCTTCATTAGCCCAAAATGATAT
TCCAGTAGCTGTTTATGATACTTTGGTCAAAACGGTCAATGAAAATTTGGGGCTACTGCATGAGTATGTAGCTTTACGCA
AGGATATCTTAGGTGTCGACGAGTTGCATATGTATGATATGTATACTCCATTGACGGGTGAACCGACATTGACGTTCACT
TATAAACAGGCTAAAAAGATGACTTTAGAGGCCTTGAGCGTCTTAGGTGAAGAGTATCTTGCTTATGTAGAGAAAGCTTT
TGACGAACGCTGGATCGATGTGGTCGCTAATGCAGGTAAACGTTCAGGAGCGTACTCAGGTGGGGCTTATGATACTGCAC
CATATATTTTATTGAATTGGCAAGATACGTTGGATAATCTCTTTACGTTAGTTCATGAGATGGGACACACGATGCACAGT
TACTATACACGGACCAATCAACCTTATCAATATGGGGATTATTCGATCTTTGTTGCGGAGATCGCCTCAACGACAAACGA
AAACTTGTTGACCCAGTATTTGTTAGAGACTCAAACTGATCCTAAGGTACGGGCTTACGTATTGAATCACTATCTAGATG
GCTTTAAAGGAACTGTTTATCGGCAAACCCAATTTGCTGAATTTGAAGCTTGGATCCATGAACAAGATGCTTCCCAAGTA
CCATTGACAGCAAATCTGATGTCAGATTTCTACGGTAAACTAAATCAACGCTACTATGGTAGTGCAGTCGAAAATGACCC
AGAGATCGCATATGAATGGTCACGGATCCCGCATTTTTACTACAATTTCTATGTTTATCAATACGCAACTGGTTTTGGGG
CAGCTTCTACTTTAGCAGAGCGCGTCTTAGATGAAGAACCGGCGCATACGGAAGCTTATTTGGACTACTTAAAAGCAGGT
AGTTCAGCTGCTCCATTAGAGGTAATGAAAAAAGCTGGTGTTGATATGACTGATAGTAAATATCTAGAGAAAGCTTTTGG
TATCTTTAAGGAACGTTTGGCTGAATTAAAAGAGCTATTAGCTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.12

98.505

0.523

Multiple sequence alignment