Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACDQ48_RS00455 | Genome accession | NZ_CP173118 |
| Coordinates | 93125..93715 (+) | Length | 196 a.a. |
| NCBI ID | WP_005709832.1 | Uniprot ID | A0A0J6XXP0 |
| Organism | Lacticaseibacillus rhamnosus strain B3421 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 90605..108062 | 93125..93715 | within | 0 |
Gene organization within MGE regions
Location: 90605..108062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACDQ48_RS00425 | - | 90605..90703 (+) | 99 | Protein_83 | single-stranded DNA-binding protein | - |
| ACDQ48_RS00430 | - | 91083..91310 (+) | 228 | WP_012807316.1 | hypothetical protein | - |
| ACDQ48_RS00435 | - | 91405..91917 (+) | 513 | WP_223804855.1 | PedC/BrcD family bacteriocin maturation disulfide isomerase | - |
| ACDQ48_RS00440 | - | 92045..92131 (-) | 87 | Protein_86 | deoxyribose-phosphate aldolase | - |
| ACDQ48_RS00445 | ssb | 92241..92672 (+) | 432 | WP_005690380.1 | single-stranded DNA-binding protein | - |
| ACDQ48_RS00450 | rpsF | 92799..93095 (+) | 297 | WP_005685677.1 | 30S ribosomal protein S6 | - |
| ACDQ48_RS00455 | ssb | 93125..93715 (+) | 591 | WP_005709832.1 | single-stranded DNA-binding protein | Machinery gene |
| ACDQ48_RS00460 | rpsR | 93807..94043 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| ACDQ48_RS00465 | - | 94437..94943 (-) | 507 | WP_005685670.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| ACDQ48_RS00470 | - | 95254..96732 (+) | 1479 | WP_014568874.1 | cytochrome ubiquinol oxidase subunit I | - |
| ACDQ48_RS00475 | cydB | 96725..97744 (+) | 1020 | WP_014568875.1 | cytochrome d ubiquinol oxidase subunit II | - |
| ACDQ48_RS00480 | - | 97784..97978 (+) | 195 | WP_005707490.1 | hypothetical protein | - |
| ACDQ48_RS00485 | - | 98057..98314 (-) | 258 | WP_015764802.1 | hypothetical protein | - |
| ACDQ48_RS00490 | - | 98470..99486 (+) | 1017 | WP_014568877.1 | IS30 family transposase | - |
| ACDQ48_RS00495 | - | 100522..101199 (+) | 678 | WP_014568879.1 | CPBP family intramembrane glutamic endopeptidase | - |
| ACDQ48_RS00500 | - | 101591..101731 (+) | 141 | WP_014568880.1 | hypothetical protein | - |
| ACDQ48_RS00505 | - | 101743..103158 (-) | 1416 | WP_015764803.1 | IS5-like element ISLrh2 family transposase | - |
| ACDQ48_RS00510 | - | 103355..104047 (+) | 693 | WP_014568882.1 | CPBP family intramembrane glutamic endopeptidase | - |
| ACDQ48_RS00515 | - | 104363..104698 (-) | 336 | WP_157662379.1 | hypothetical protein | - |
| ACDQ48_RS00520 | - | 104810..105334 (-) | 525 | WP_014568884.1 | ABC transporter permease | - |
| ACDQ48_RS00525 | - | 105521..106939 (+) | 1419 | WP_003605947.1 | IS5-like element ISLrh3 family transposase | - |
| ACDQ48_RS00530 | - | 107154..108062 (-) | 909 | WP_014568886.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 20932.66 Da Isoelectric Point: 4.9056
>NTDB_id=1070277 ACDQ48_RS00455 WP_005709832.1 93125..93715(+) (ssb) [Lacticaseibacillus rhamnosus strain B3421]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 591 bp
>NTDB_id=1070277 ACDQ48_RS00455 WP_005709832.1 93125..93715(+) (ssb) [Lacticaseibacillus rhamnosus strain B3421]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.204 |
100 |
0.602 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.749 |
100 |
0.505 |