Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACIGXT_RS16945 Genome accession   NZ_CP173038
Coordinates   3432069..3432758 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain Shannan.BV80-12     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3427069..3437758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIGXT_RS16910 (ACIGXT_16910) - 3427267..3427749 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACIGXT_RS16915 (ACIGXT_16915) flgM 3427764..3428030 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACIGXT_RS16920 (ACIGXT_16920) - 3428100..3428519 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACIGXT_RS16925 (ACIGXT_16925) comFC 3428593..3429282 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACIGXT_RS16930 (ACIGXT_16930) - 3429288..3429572 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACIGXT_RS16935 (ACIGXT_16935) comFA 3429630..3431015 (-) 1386 WP_044052858.1 DEAD/DEAH box helicase Machinery gene
  ACIGXT_RS16940 (ACIGXT_16940) - 3431123..3431971 (-) 849 WP_044052857.1 DegV family protein -
  ACIGXT_RS16945 (ACIGXT_16945) degU 3432069..3432758 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACIGXT_RS16950 (ACIGXT_16950) degS 3432835..3433998 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACIGXT_RS16955 (ACIGXT_16955) - 3434221..3434868 (+) 648 WP_003151384.1 YigZ family protein -
  ACIGXT_RS16960 (ACIGXT_16960) - 3434873..3436087 (+) 1215 WP_014305930.1 LCP family protein -
  ACIGXT_RS16965 (ACIGXT_16965) - 3436177..3437253 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1070146 ACIGXT_RS16945 WP_003219701.1 3432069..3432758(-) (degU) [Bacillus velezensis strain Shannan.BV80-12]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1070146 ACIGXT_RS16945 WP_003219701.1 3432069..3432758(-) (degU) [Bacillus velezensis strain Shannan.BV80-12]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment