Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACIFYW_RS04110 Genome accession   NZ_CP173026
Coordinates   889290..890657 (+) Length   455 a.a.
NCBI ID   WP_404272853.1    Uniprot ID   -
Organism   Vibrio cholerae strain SPH 24-01     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 884290..895657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFYW_RS04090 (ACIFYW_04090) rsxB 884779..885366 (-) 588 WP_404272755.1 electron transport complex subunit RsxB -
  ACIFYW_RS04095 (ACIFYW_04095) rsxA 885366..885947 (-) 582 WP_114717094.1 electron transport complex subunit RsxA -
  ACIFYW_RS04105 (ACIFYW_04105) uvrB 886829..888859 (+) 2031 WP_404272756.1 excinuclease ABC subunit UvrB -
  ACIFYW_RS04110 (ACIFYW_04110) luxO 889290..890657 (+) 1368 WP_404272853.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACIFYW_RS04115 (ACIFYW_04115) luxU 890661..891002 (+) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ACIFYW_RS04120 (ACIFYW_04120) - 890991..891881 (-) 891 WP_404272757.1 YvcK family protein -
  ACIFYW_RS04125 (ACIFYW_04125) moaA 892187..893176 (+) 990 WP_114717095.1 GTP 3',8-cyclase MoaA -
  ACIFYW_RS04130 (ACIFYW_04130) moaB 893236..893748 (+) 513 WP_095490393.1 molybdenum cofactor biosynthesis protein B -
  ACIFYW_RS04135 (ACIFYW_04135) moaC 893759..894238 (+) 480 WP_000080908.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACIFYW_RS04140 (ACIFYW_04140) moaD 894235..894507 (+) 273 WP_404272758.1 molybdopterin converting factor subunit 1 -
  ACIFYW_RS04145 (ACIFYW_04145) moaE 894509..894970 (+) 462 WP_000350082.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50820.08 Da        Isoelectric Point: 5.5571

>NTDB_id=1070031 ACIFYW_RS04110 WP_404272853.1 889290..890657(+) (luxO) [Vibrio cholerae strain SPH 24-01]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFHQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1070031 ACIFYW_RS04110 WP_404272853.1 889290..890657(+) (luxO) [Vibrio cholerae strain SPH 24-01]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGTCGTCGCGAGCCGGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTTATTCAGACTGGGACATTCCAAAAAGTTGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGTTTTCGTGAAGACCTGTACTACCGTTTGT
ATGTGATTCCGCTGCATTTACCGCCATTGCGCGCGCGCGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCATCAATACGAGTGGCCGGG
CAATGTGCGTCAATTGCAAAACGTCCTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCATTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGTAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment