Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ACIHQS_RS08340 Genome accession   NZ_CP173025
Coordinates   1750321..1750827 (-) Length   168 a.a.
NCBI ID   WP_081104367.1    Uniprot ID   A0A150I0B9
Organism   Acinetobacter venetianus strain AVYS1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1745321..1755827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS08310 (ACIHQS_08310) tadA 1745526..1746035 (-) 510 WP_061524677.1 tRNA adenosine(34) deaminase TadA -
  ACIHQS_RS08315 (ACIHQS_08315) - 1746042..1747163 (-) 1122 WP_007481840.1 enoyl-CoA hydratase/isomerase family protein -
  ACIHQS_RS08320 (ACIHQS_08320) ung 1747163..1747876 (-) 714 WP_404231588.1 uracil-DNA glycosylase -
  ACIHQS_RS08325 (ACIHQS_08325) - 1747921..1748517 (-) 597 WP_061518371.1 6-carboxytetrahydropterin synthase -
  ACIHQS_RS08330 (ACIHQS_08330) gspK 1748625..1749581 (-) 957 WP_404231678.1 type II secretion system minor pseudopilin GspK -
  ACIHQS_RS08335 (ACIHQS_08335) xcpW 1749584..1750321 (-) 738 WP_404231590.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACIHQS_RS08340 (ACIHQS_08340) xcpV 1750321..1750827 (-) 507 WP_081104367.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACIHQS_RS08345 (ACIHQS_08345) - 1750817..1751392 (-) 576 WP_404231680.1 type II secretion system protein -
  ACIHQS_RS08350 (ACIHQS_08350) - 1751699..1752307 (-) 609 WP_017196661.1 TetR/AcrR family transcriptional regulator -
  ACIHQS_RS08355 (ACIHQS_08355) - 1752348..1753121 (-) 774 WP_404231593.1 TatD family hydrolase -
  ACIHQS_RS08360 (ACIHQS_08360) - 1753147..1753491 (-) 345 WP_404231595.1 PilZ domain-containing protein -
  ACIHQS_RS08365 (ACIHQS_08365) - 1753804..1754787 (-) 984 WP_404231597.1 DNA polymerase III subunit delta' -
  ACIHQS_RS08370 (ACIHQS_08370) kdsB 1754794..1755555 (-) 762 WP_404231599.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18500.32 Da        Isoelectric Point: 10.6495

>NTDB_id=1069997 ACIHQS_RS08340 WP_081104367.1 1750321..1750827(-) (xcpV) [Acinetobacter venetianus strain AVYS1]
MKIRYSKHSALSGTQTKLCFANPATQSIASRLATRSSVARFNRVSGFTLLEVMVALAIFAVAAIALTKIAMQYTQSTSNA
ILRTKAQFVAMNEVATMEMNQEWLDGTQSKQVTSQGETWQIDKKAQSTISPKIQRIELQVSLFNADQGKVEAGITNVVFF
NYPAKART

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1069997 ACIHQS_RS08340 WP_081104367.1 1750321..1750827(-) (xcpV) [Acinetobacter venetianus strain AVYS1]
ATGAAAATTAGATACTCAAAACATAGTGCTCTTTCAGGTACTCAGACGAAACTATGTTTTGCTAATCCTGCAACTCAAAG
CATAGCTTCTCGTCTTGCGACACGATCAAGCGTTGCTCGATTTAATCGTGTCTCAGGATTTACCTTGCTTGAAGTTATGG
TCGCATTGGCTATCTTTGCAGTCGCAGCAATTGCTTTAACAAAAATAGCGATGCAATACACTCAGTCGACTTCAAATGCA
ATTTTACGGACCAAAGCACAGTTTGTTGCTATGAATGAAGTTGCCACGATGGAAATGAACCAAGAGTGGCTAGATGGAAC
TCAATCTAAACAAGTGACCTCTCAAGGTGAAACGTGGCAAATTGATAAAAAAGCACAATCAACGATTAGCCCCAAGATAC
AACGTATTGAACTGCAAGTTAGCTTATTTAATGCTGATCAAGGCAAAGTAGAAGCGGGAATTACTAATGTTGTATTTTTT
AATTATCCAGCAAAAGCTAGAACATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(83-142)

Prokaryotic N-terminal methylation motif (N_methyl)

(42-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150I0B9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

83.607

72.619

0.607

Multiple sequence alignment