Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACIHQS_RS01320 Genome accession   NZ_CP173025
Coordinates   280576..282801 (-) Length   741 a.a.
NCBI ID   WP_404229897.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275576..287801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS01300 (ACIHQS_01300) - 276026..276637 (-) 612 WP_404229885.1 nitroreductase family protein -
  ACIHQS_RS01305 (ACIHQS_01305) - 276743..277642 (+) 900 WP_404229888.1 LysR family transcriptional regulator -
  ACIHQS_RS01310 (ACIHQS_01310) hslO 277726..278601 (-) 876 WP_404229891.1 Hsp33 family molecular chaperone HslO -
  ACIHQS_RS01315 (ACIHQS_01315) - 278721..280538 (-) 1818 WP_404229894.1 cation:proton antiporter -
  ACIHQS_RS01320 (ACIHQS_01320) priA 280576..282801 (-) 2226 WP_404229897.1 primosomal protein N' Machinery gene
  ACIHQS_RS01325 (ACIHQS_01325) gspF 282963..284168 (+) 1206 WP_404229900.1 type II secretion system inner membrane protein GspF -
  ACIHQS_RS01330 (ACIHQS_01330) gspG 284177..284710 (+) 534 WP_404229903.1 type II secretion system major pseudopilin GspG -
  ACIHQS_RS01335 (ACIHQS_01335) - 284974..285318 (+) 345 WP_404229906.1 hypothetical protein -
  ACIHQS_RS01340 (ACIHQS_01340) - 285346..285732 (+) 387 WP_286401837.1 hypothetical protein -
  ACIHQS_RS01345 (ACIHQS_01345) lnt 285832..287391 (-) 1560 WP_404229909.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84302.19 Da        Isoelectric Point: 8.8269

>NTDB_id=1069988 ACIHQS_RS01320 WP_404229897.1 280576..282801(-) (priA) [Acinetobacter venetianus strain AVYS1]
MPTENSNATLYRIRVAIPVYVYDTFDYTVNAEQYAQAQIGARVAISFGRQNLVGIITEKVNPDEAFTGQFKLKAITELLD
KEAILDQQVLTLLTWSAQYYQFPIGEVMQSALPSLLRQGRALDILFHQWQILPHDDPNALLKRSQKQYDAYQVLKLHPHG
TTENVLNLSGVETSTLKALEKKQLIECRLEPHDFTPMPVQLAQMPLTPNEDQKKAIQQIVKAQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHTRDVALYRGHLQGCPVILGSATPSLDSYHLVESGKLHLLELNQRAGIAVLPKMHV
IDLKIAKKQHGISQNLIDQIKLTLEKKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIH
RLPDHCPECQKQTLKSIGAGTAKLEEHLQELFPHHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDPRAPERTAQLIVQVSGRAGRGEHKGNVYLQSLRPDHPMLTTLIKHDYRTVAKQMLAERKIAML
PPYRYAALVRVESKNREYSQQFLSEAAQQLRTMAAEIVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1069988 ACIHQS_RS01320 WP_404229897.1 280576..282801(-) (priA) [Acinetobacter venetianus strain AVYS1]
ATGCCTACCGAAAATTCTAACGCGACGCTCTACCGTATTCGAGTTGCAATACCCGTATATGTCTATGACACCTTTGACTA
TACAGTCAACGCGGAGCAATATGCCCAAGCGCAAATCGGCGCGCGTGTAGCGATCTCTTTCGGAAGACAAAATCTAGTTG
GCATCATTACCGAAAAGGTCAATCCCGACGAAGCTTTTACAGGACAGTTCAAGTTAAAAGCCATCACTGAATTACTCGAT
AAGGAAGCCATCTTAGACCAACAAGTTTTAACTTTATTGACATGGTCTGCACAGTATTATCAATTTCCAATTGGCGAAGT
CATGCAAAGTGCCTTACCCAGTTTACTGAGGCAAGGTCGCGCACTGGATATTTTATTTCACCAATGGCAAATCCTGCCCC
ACGACGACCCGAATGCTTTATTGAAACGCTCTCAGAAACAATATGATGCTTATCAAGTCTTAAAATTACACCCACATGGT
ACAACCGAAAATGTACTCAACCTGAGTGGTGTCGAAACTTCCACACTCAAAGCATTAGAAAAGAAGCAACTGATTGAATG
TCGTTTAGAACCACATGATTTTACGCCGATGCCTGTGCAACTGGCGCAAATGCCGTTGACACCAAATGAAGATCAGAAAA
AAGCGATCCAACAGATCGTGAAAGCACAGCATCATTACCAAGCCTTTTTACTCGATGGTTTGACGGGAAGTGGTAAAACT
GAAGTCTACTTACAAGTTATGCATGAGGTACTAAAACAAGGCAAGCAAGTTCTCGTACTCGTTCCTGAAATCGGCTTGAC
GCCACAAACTGTTGCTCGATTTAAATCACGATTTCATTGTGATGTGGCCTTACTTCATTCAGGGTTAAATGATTCAAAAC
GATTACAAGCATGGCAACATGCTCAGACAGGCAAAGCATCAATTGTGATCGGTACACGTTCCGCAATTTATACACCGATG
CCAAATCTTGGCTTGATTATTTTGGATGAGGAACATGACCTCTCCTTTAAACAGCAAGAGGGCTTCCGCTATCACACGCG
AGATGTCGCATTATATCGAGGACATTTACAAGGTTGCCCTGTGATTTTAGGTTCAGCGACCCCAAGCTTAGATAGCTACC
ATCTCGTAGAATCAGGCAAATTACATTTGCTTGAGCTGAATCAGCGTGCAGGTATTGCGGTATTACCCAAAATGCATGTG
ATTGATTTAAAAATCGCAAAGAAGCAGCACGGCATCAGCCAAAACTTGATTGATCAAATCAAACTGACGTTAGAAAAAAA
AGAACAAGTGCTGATTTTTTTAAATCGACGTGGCTATGCGCCGATCTTGATGTGTGAAAGTTGTGGTTGGCAAGCAAACT
GTCCACATTGTGATGCGCATTTTACATTGCATTCTCAGCCTTATCATTATTTGCATTGCCATCATTGCGGTACAATTCAT
CGCCTACCTGATCATTGCCCTGAATGCCAAAAACAAACCTTAAAAAGTATCGGTGCAGGCACAGCAAAACTGGAAGAACA
TTTGCAGGAACTGTTTCCGCATCATGATGTGATTCGGGTAGATCGAGACAGTACCAGTCGGGTCGGCAGTTGGCAGAAGA
TTTATGATCGTATCCAACAAAATAAGCCGAGCATTTTATTGGGCACACAAATGCTAGCAAAAGGACATCATTTTCCACAT
GTCACTTTAGTTGCGATTTTAGATATTGATGCAGGTTTACTGAGTGTTGACCCTCGCGCACCTGAACGTACAGCACAGTT
AATTGTCCAAGTCTCAGGCCGTGCAGGTCGTGGAGAACATAAAGGTAATGTTTATCTACAAAGCTTACGTCCCGATCACC
CAATGCTGACCACATTGATTAAGCATGATTATCGAACTGTGGCAAAGCAAATGCTGGCTGAACGTAAAATTGCCATGCTG
CCACCTTATAGATATGCAGCATTGGTACGAGTCGAATCAAAAAATCGAGAATATAGCCAACAATTCTTGAGTGAAGCAGC
ACAACAGCTGAGAACAATGGCCGCTGAAATTGTCGATATTTGGGGCCCTATCCCTGCACCAATGGAGCGTAAAGCGGGAC
GTTATCGTGCGCATATGGTGATTTTATCTGCCGATCGAGCAAAACTGCATTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAGCATCAGCTCAGGCTATCGATTGACGTTGATCCACAAGAGTTTAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.867

99.73

0.816

Multiple sequence alignment