Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACIHQS_RS00650 Genome accession   NZ_CP173025
Coordinates   133347..134777 (-) Length   476 a.a.
NCBI ID   WP_404229701.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 128347..139777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS00635 (ACIHQS_00635) lptG 129314..130384 (+) 1071 WP_004876343.1 LPS export ABC transporter permease LptG -
  ACIHQS_RS00640 (ACIHQS_00640) gpmI 130502..132052 (+) 1551 WP_023013639.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACIHQS_RS00645 (ACIHQS_00645) - 132133..133308 (+) 1176 WP_404229698.1 S41 family peptidase -
  ACIHQS_RS00650 (ACIHQS_00650) pilR 133347..134777 (-) 1431 WP_404229701.1 sigma-54-dependent transcriptional regulator Regulator
  ACIHQS_RS00655 (ACIHQS_00655) pilS 134800..136365 (-) 1566 WP_004876350.1 PAS domain-containing sensor histidine kinase Regulator
  ACIHQS_RS00660 (ACIHQS_00660) - 136380..137015 (-) 636 WP_404229704.1 response regulator -
  ACIHQS_RS00665 (ACIHQS_00665) pbpG 137227..138291 (+) 1065 WP_130133757.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACIHQS_RS00670 (ACIHQS_00670) - 138538..139440 (+) 903 WP_404229708.1 hypothetical protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53287.24 Da        Isoelectric Point: 6.1504

>NTDB_id=1069981 ACIHQS_RS00650 WP_404229701.1 133347..134777(-) (pilR) [Acinetobacter venetianus strain AVYS1]
MATKQPLVLLVDDEEDLCLLMQMTLSRMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDTAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWELPAKSISSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPILAPAASLSAP
EDVEYAQQSPSPTMSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=1069981 ACIHQS_RS00650 WP_404229701.1 133347..134777(-) (pilR) [Acinetobacter venetianus strain AVYS1]
ATGGCAACTAAACAACCACTCGTTCTACTCGTAGACGATGAAGAAGACTTATGTCTTTTAATGCAAATGACGCTATCTCG
AATGGGGATCAAAACTCATTTAGCATATCGCGTAGAGCAAGCAAAAAAATTCTTTACCGAGTTTCAATACGATGCTTGTT
TAACTGATTTAAACCTCCCAGACGGTAATGGTCTCGATTTAGTTAAACACGTCACACAAAATTATCCGAATACGCCGATT
GCAGTCCTTACGGCTTATGGCAATATGGATACAGCGATTGCAGCACTGAAAGCAGGTGCTTTTGACTTTGTCAGTAAACC
GGTCAATCAAACCCATTTAGATCAGCTCATTCAAAAAGCTTTAAATCGACCGCAACCTGAGCAAGAAGCTGCTGAAACAG
CCTTAGAAAATAAGCTCTTGATTGGGCGTTCTGCTCCTATTCAACAATTGCGTATTGCATTAAAGAAAATCGCCCGTTCG
CAAGCGCCTGTTTTCATTACAGGTGAATCGGGAACAGGGAAAGAAGTCGTTGCAAACCTTGTGCATCGTTTAAGCAACCG
CAGTGAAGGTCCTTTTATCGCAATTAACTGTGGTGCTATTCCAACAGAGCTCATGGAAAGTGAGTTATTTGGGCATAAAA
AAGGTAGCTTTACTGGTGCAACCCAAGATAAACAAGGTTTAATTTTATCAGCACATGGCGGTAGTTTATTTCTAGATGAA
ATTGCTGAACTGCCATTAAGTATGCAAGTAAAACTCTTGCGTGCCGTGCAGGAGAAAAAAATTCGCCCTGTTGGTTCTGA
TCAAGAGATTGATGTTGATTTCCGCGTGATTAGTGCCAGCCATCAAGACTTAGAATTACTTGTGCAGCAAGGGCGTTTTA
GACAGGACTTATTCTTCCGTATCCATGTCATGGATATTGTTCTGCCTCCGTTACGTGAACGCGGTCAAGATATCTTGTTA
TTGGCAAATCACTTCATTCAAAAAATTAGTCAAGAGTGGGAGCTTCCTGCAAAATCAATTTCTTCGAGAGCAGAACAGTT
TTTACTACAACAGTATTTCCCAGGAAATGTACGTGAATTACGTAACATCATCGAACGCGCCATTACCTTAAGTGATGATG
AAACGATTGATCTTGCTCATTTGCAAACCGCACCACTACGTAGTCCAATTCTCGCCCCTGCCGCATCACTTTCCGCGCCA
GAAGACGTTGAATATGCACAACAGAGTCCAAGTCCAACTATGAGTTCTAAAAAGCTTCCTCCAGAAGGGTTGGAGCGCTA
TTTAGAAAATATTGAAAAAGAAGTTTTACTCAATGCATTGAATTTAACGCATTGGAATCGAACTTTAGCGGCGAAGAAAC
TTGGAATGACATTTAGATCATTACGTTACCGCTTGAAAAAATTTGGTTTAGATACTGAAGACGACGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.403

100

0.834
  pilR Pseudomonas aeruginosa PAK

50.862

97.479

0.496

Multiple sequence alignment