Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   ACG2K1_RS07560 Genome accession   NZ_CP173024
Coordinates   1522465..1524180 (-) Length   571 a.a.
NCBI ID   WP_395428652.1    Uniprot ID   -
Organism   Neisseria sp. 23W00296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1517465..1529180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2K1_RS07520 (ACG2K1_07520) dusA 1518002..1519036 (-) 1035 WP_395428649.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACG2K1_RS07525 (ACG2K1_07525) nqrM 1519118..1519336 (-) 219 WP_009425695.1 (Na+)-NQR maturation NqrM -
  ACG2K1_RS07530 (ACG2K1_07530) - 1519333..1520394 (-) 1062 WP_395428650.1 FAD:protein FMN transferase -
  ACG2K1_RS07540 (ACG2K1_07540) - 1520740..1521105 (-) 366 WP_036495789.1 hypothetical protein -
  ACG2K1_RS07545 (ACG2K1_07545) - 1521204..1521461 (-) 258 WP_009425698.1 DUF1289 domain-containing protein -
  ACG2K1_RS07550 (ACG2K1_07550) - 1521466..1521909 (-) 444 WP_009425699.1 DNA polymerase III subunit chi -
  ACG2K1_RS07555 (ACG2K1_07555) - 1521937..1522335 (-) 399 WP_395428651.1 immunity 22 family protein -
  ACG2K1_RS07560 (ACG2K1_07560) recD 1522465..1524180 (-) 1716 WP_395428652.1 exodeoxyribonuclease V subunit alpha Machinery gene
  ACG2K1_RS07565 (ACG2K1_07565) - 1524501..1527866 (-) 3366 WP_395428653.1 DNA translocase FtsK -
  ACG2K1_RS07570 (ACG2K1_07570) - 1527992..1528684 (+) 693 WP_036495804.1 energy-coupling factor ABC transporter permease -
  ACG2K1_RS07575 (ACG2K1_07575) crcB 1528681..1529073 (+) 393 WP_009425705.1 fluoride efflux transporter CrcB -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 60531.90 Da        Isoelectric Point: 6.2572

>NTDB_id=1069960 ACG2K1_RS07560 WP_395428652.1 1522465..1524180(-) (recD) [Neisseria sp. 23W00296]
MSDNEFRNAAADVALEVLQRLFPEAAAVCAPFLPRLFSALDDGHSFIWLNDAEAESLDSAAPLADGTGRAPLVLRGRRLF
LGRLWQLENDLAGEIRRLAAAPAAPADMRAAAENLGLWFDGAGSEGQQAAAALALLQNFMLITGGPGTGKTTTVAKLLAL
LCSGADPLPRIALAAPTGKAAAHMGNALHAALGRFPLSDGLKERLSALEGQTVHRLLKLRPPQMRPQFDAARPLPLDILV
VDEASMLDLALMLDLLRAVPDGCRVILLGDENQLPSVGAGAVLAALARPTVLDADTAGRLKTLLPDAAERFQTASNAPPL
SANTARLTVSHRFGEHSGLGALARAVCAGDAAGAEDAFARFPEELSFADGGAERLAERFCRTQAAFWQAADAADPAAAFA
CQSRLTVLAARRGDAERFNEACRRILLREGRAREDRAWFAGQILMVERNDYAMGLFNGDIGIVMRDPHGSDGLSVRFPAG
GGFRSVPLSRLPAHSSAFAVTVHKSQGSEYGEVWLLAPEGGGEGFNRSLLYTAVTRARERFVYAGSRESFAAACANAETR
RTALREFLAAG

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1069960 ACG2K1_RS07560 WP_395428652.1 1522465..1524180(-) (recD) [Neisseria sp. 23W00296]
ATGTCCGACAACGAATTCCGCAACGCCGCCGCCGATGTCGCGCTCGAAGTGCTGCAACGCCTGTTTCCCGAAGCCGCCGC
CGTGTGCGCACCTTTTCTGCCGCGCCTGTTTTCCGCGCTCGACGACGGCCACAGTTTTATTTGGCTGAACGACGCGGAGG
CCGAATCGCTTGATAGCGCCGCGCCGCTGGCCGACGGCACGGGCAGGGCGCCGCTGGTGTTGCGCGGGCGGCGGCTGTTT
CTCGGACGCCTGTGGCAGTTGGAAAACGATTTGGCGGGCGAAATCCGCCGCCTCGCCGCCGCGCCCGCCGCGCCTGCCGA
TATGCGGGCGGCGGCGGAAAACCTCGGCCTGTGGTTTGACGGTGCGGGCAGCGAAGGGCAGCAGGCCGCCGCCGCGCTGG
CGCTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGCACGGGCAAAACCACCACCGTCGCCAAGCTGCTCGCCCTT
TTGTGTTCGGGCGCCGACCCTCTGCCGCGCATCGCGCTGGCCGCGCCGACGGGCAAGGCGGCGGCGCATATGGGCAACGC
GCTGCACGCGGCGCTCGGCCGTTTCCCGCTTTCAGACGGCCTCAAAGAGCGGTTGTCTGCCCTCGAAGGGCAAACCGTCC
ACCGCCTGCTGAAACTGCGTCCGCCGCAGATGCGGCCGCAGTTTGACGCCGCCCGCCCGCTGCCGCTGGATATTTTGGTG
GTGGACGAAGCCTCGATGCTCGATCTGGCGCTGATGCTCGATCTGCTGCGCGCCGTGCCCGACGGTTGCCGCGTGATTCT
GTTGGGCGACGAAAACCAGCTTCCTTCCGTCGGCGCGGGTGCGGTGCTGGCGGCGCTGGCGCGGCCGACCGTGCTCGATG
CCGACACCGCAGGCCGTCTGAAAACCCTGCTGCCCGATGCCGCAGAGCGTTTTCAGACGGCCTCAAACGCGCCGCCCCTG
TCGGCCAATACCGCCCGCCTCACCGTCAGCCACCGCTTCGGCGAACACAGCGGTTTGGGCGCGCTGGCGCGGGCGGTGTG
CGCGGGCGATGCGGCGGGAGCGGAAGACGCCTTCGCCCGTTTCCCCGAAGAATTGTCGTTTGCCGATGGCGGCGCCGAAC
GTTTGGCGGAGCGTTTCTGCCGCACGCAGGCGGCGTTTTGGCAGGCGGCCGATGCCGCCGATCCTGCCGCCGCTTTTGCC
TGCCAGAGCCGCCTCACCGTGCTGGCCGCGCGGCGCGGCGACGCCGAACGTTTTAACGAAGCCTGCCGCCGCATTCTGCT
GCGCGAAGGGCGCGCGCGCGAAGACAGGGCGTGGTTTGCCGGACAAATCCTGATGGTGGAGCGCAACGATTACGCGATGG
GGCTGTTTAACGGCGACATCGGCATTGTGATGCGCGATCCGCACGGCTCGGACGGCCTGTCGGTGCGGTTTCCCGCAGGC
GGCGGTTTCCGCAGCGTGCCGCTCAGCCGCCTGCCCGCGCACAGCAGCGCGTTTGCCGTGACCGTGCACAAAAGCCAGGG
CTCGGAATACGGCGAAGTGTGGCTGCTCGCGCCCGAAGGCGGCGGAGAGGGTTTCAACCGCTCCCTGCTGTACACCGCCG
TCACCCGCGCGCGCGAACGCTTTGTATACGCAGGCAGCCGCGAATCCTTCGCTGCCGCCTGCGCCAATGCCGAAACCCGC
CGCACCGCCCTGCGCGAATTTTTGGCGGCAGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-289)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(497-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

53.819

100

0.543

Multiple sequence alignment