Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   ACG2K1_RS05650 Genome accession   NZ_CP173024
Coordinates   1125678..1129244 (-) Length   1188 a.a.
NCBI ID   WP_395428463.1    Uniprot ID   -
Organism   Neisseria sp. 23W00296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120678..1134244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2K1_RS05625 (ACG2K1_05625) - 1120858..1121652 (+) 795 WP_395428461.1 GDP-L-fucose synthase -
  ACG2K1_RS05630 (ACG2K1_05630) - 1121799..1122329 (+) 531 WP_395428462.1 SCP2 domain-containing protein -
  ACG2K1_RS05635 (ACG2K1_05635) - 1122570..1123892 (-) 1323 WP_036496377.1 paraquat-inducible protein A -
  ACG2K1_RS05640 (ACG2K1_05640) - 1124032..1124418 (-) 387 WP_009426693.1 MAPEG family protein -
  ACG2K1_RS05645 (ACG2K1_05645) - 1124636..1125595 (+) 960 WP_009426695.1 phosphatidate cytidylyltransferase -
  ACG2K1_RS05650 (ACG2K1_05650) recB 1125678..1129244 (-) 3567 WP_395428463.1 exodeoxyribonuclease V subunit beta Machinery gene
  ACG2K1_RS05655 (ACG2K1_05655) serS 1129683..1130975 (-) 1293 WP_009426157.1 serine--tRNA ligase -
  ACG2K1_RS05660 (ACG2K1_05660) - 1131193..1131774 (+) 582 WP_395428464.1 superoxide dismutase -
  ACG2K1_RS05665 (ACG2K1_05665) - 1132023..1132721 (-) 699 WP_009426153.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  ACG2K1_RS05670 (ACG2K1_05670) queF 1132732..1133205 (-) 474 WP_009426152.1 preQ(1) synthase -
  ACG2K1_RS05675 (ACG2K1_05675) - 1133574..1133729 (+) 156 WP_157058129.1 hypothetical protein -

Sequence

Protein


Download         Length: 1188 a.a.        Molecular weight: 132146.53 Da        Isoelectric Point: 6.1958

>NTDB_id=1069957 ACG2K1_RS05650 WP_395428463.1 1125678..1129244(-) (recB) [Neisseria sp. 23W00296]
MNPTALPFSPLDIPISGTSLIEASAGTGKTYGIAALFARLILLEKMSVDKVLVVTFTKAATAELKTRLRARLDEALRRLQ
GTDLPEAADEFMSGLLQRALEQEPRERLQLRLKSALSQFDSAAIYTIHGFCRRLLGDYAFFCQVPFDTELDENGKRELYT
YAQDFWRLRVADNGRLARLVFRAKLLPDALLDELSPYLARPALTFRRPDDNILPEAEKQAQSAWRTLRGKLPELTATFWR
VHPSLSGSKFKKALYETKFAELAALAESEEMPSEKLAQLLANTKGISVFAPEYLEAAVKKGQNPAAADLADLTLLHGAHQ
AAENLLAAEHQALIALQLDFLQYVRESAAEKRRTRTGRSPDELLLDVYHALTAGTHAETLADTVAHNWPVALIDEFQDTD
PLQYEIFRRIFIERRRPLFLVGDPKQAIYAFRGADIYAYLQAAADTPQHYTLARNFRSHRRLTEATARLFTQKKRPFVLE
RIGYPQVEANRADSRLSPPQAALNIRWLHEKGEDAPDKALLRQRAADYCADEAAALINAGAEGRLNYRGAPVLPGHIAVL
VHSHKEGQLIKRALAARGIAAVAMQRESVFKSHEAQALAALLAFWLEPQRTGLLRFVLGGVLFGHTAAQIAELNRSEAQL
AEHTAAAAAACETWQRQGIFAALAAFAAQHGIETRLLREGNERSLTNFWQLAELLAAEDEAGHTPASLHQWLLQTMQDDN
AAEHHLLRLESDEALVKIVTIHASKGLQYPFVFCPFSWDTSEAPADRWHVLHRADGSELLELSQLDEADQNQLADEDLGE
RLRLLYVALTRAEEQLTVYAARCRSTPRNTFAYLLEGSPDSSRAAVQTAYEEEKDGQSAMLRRNWLRWTESAPADSGILW
HEGAPVSAAADSRGRGTHTYRAAEYPSRRFELVRFTSFTGLTRRLSHHRAAGDELQPALDQAESAAAPPAAPASDESGML
DLFHFPRGTEAGVCLHEILEQHDFSRPAAEQSTRIADTLERYGFPEQWLETACAAADQTAAADLGAGDTLAALPAANRLA
EMGFVMHFERLDLGRLKNSLTAAGLPPVCLAAAEHLDFDTLQGFLNGFIDMTCLLSDGQPCVIDYKSNHLGNHPDDYAPA
ALDAAVAEHHYYLQAWIYALAVARYLKQRGRPVQTVRVRYLFLRGLNTENRNGIWQWDIAAEHLAPWL

Nucleotide


Download         Length: 3567 bp        

>NTDB_id=1069957 ACG2K1_RS05650 WP_395428463.1 1125678..1129244(-) (recB) [Neisseria sp. 23W00296]
ATGAACCCAACCGCCCTTCCCTTCTCCCCCCTCGACATTCCGATTTCCGGCACCTCCCTGATCGAAGCCTCGGCCGGTAC
AGGCAAAACCTACGGCATCGCCGCCCTGTTTGCCCGCCTGATCCTGCTGGAAAAAATGTCGGTAGACAAAGTGCTGGTGG
TAACTTTCACCAAAGCCGCCACCGCCGAATTGAAAACCCGCCTGCGTGCGCGGCTGGATGAAGCCCTGCGCCGTTTGCAG
GGAACGGATTTGCCCGAAGCGGCCGACGAATTCATGAGCGGCCTGCTGCAACGCGCGCTGGAACAAGAGCCACGCGAGCG
CCTGCAACTGCGCCTTAAATCCGCCCTGTCGCAGTTCGACAGCGCCGCCATCTACACCATCCACGGCTTCTGCCGCCGCC
TGCTCGGCGATTACGCCTTCTTCTGCCAAGTCCCCTTCGACACCGAACTCGACGAAAACGGCAAACGCGAACTGTACACC
TACGCACAGGACTTTTGGCGGCTGCGCGTCGCCGATAACGGGCGCCTCGCCCGCCTCGTCTTCCGCGCCAAACTCCTGCC
CGACGCGCTGTTGGACGAACTCTCGCCCTACCTCGCCCGCCCCGCCCTCACGTTCAGACGGCCTGACGACAACATCCTGC
CCGAAGCAGAAAAACAGGCGCAATCGGCATGGCGCACACTACGCGGAAAACTCCCCGAGCTCACCGCCACCTTCTGGCGC
GTGCATCCGTCATTAAGCGGCAGCAAATTCAAAAAAGCGCTTTACGAAACCAAATTCGCCGAACTGGCCGCGCTGGCCGA
AAGCGAAGAGATGCCGTCTGAAAAACTGGCGCAGCTGCTGGCTAATACCAAAGGCATCAGCGTTTTCGCCCCCGAATACC
TCGAAGCCGCCGTCAAAAAAGGGCAAAACCCCGCCGCCGCCGACCTTGCCGACCTCACCCTGCTGCACGGCGCCCACCAA
GCCGCAGAAAACCTGCTGGCCGCCGAACATCAGGCGCTGATCGCCCTGCAACTGGACTTTCTGCAATACGTGCGCGAAAG
CGCCGCCGAAAAACGCCGCACGCGCACCGGCCGCAGCCCCGACGAGCTGCTGCTCGACGTCTACCACGCCCTCACCGCAG
GCACACACGCCGAAACGCTGGCCGACACCGTGGCGCACAACTGGCCGGTCGCCCTCATCGACGAATTCCAAGACACCGAC
CCGCTGCAATACGAAATCTTCCGCCGCATCTTTATCGAGCGGCGGCGGCCGCTGTTTCTAGTCGGCGACCCCAAACAGGC
GATTTACGCCTTTCGCGGTGCCGACATCTACGCCTATCTGCAGGCCGCCGCCGACACGCCGCAGCACTACACGCTGGCGC
GCAACTTCCGCAGCCACCGCCGCCTGACCGAGGCGACGGCGCGCCTGTTCACACAAAAAAAACGTCCCTTCGTGCTCGAA
CGCATCGGCTATCCCCAAGTCGAAGCCAACCGCGCCGACAGCCGCCTCAGCCCGCCGCAGGCCGCCCTCAACATCCGCTG
GCTGCACGAGAAAGGCGAAGACGCGCCCGACAAAGCCCTCCTGCGCCAACGCGCCGCCGACTACTGCGCCGACGAAGCCG
CCGCCCTCATCAACGCGGGTGCAGAAGGCCGTCTGAACTACCGCGGCGCTCCCGTGCTGCCCGGGCACATCGCCGTCCTC
GTCCATAGCCACAAAGAAGGCCAGCTTATCAAACGCGCCCTTGCCGCACGCGGCATCGCCGCCGTTGCCATGCAGCGCGA
ATCCGTTTTCAAAAGCCACGAAGCCCAAGCCCTCGCCGCCCTTCTGGCCTTCTGGCTCGAACCGCAGCGCACCGGCCTGC
TGCGCTTCGTGCTCGGTGGCGTGCTGTTCGGCCATACCGCCGCCCAAATCGCCGAACTCAACCGCAGCGAAGCGCAACTG
GCCGAACACACCGCCGCCGCAGCCGCCGCCTGCGAAACCTGGCAGCGGCAGGGCATTTTCGCCGCCCTCGCCGCCTTTGC
CGCGCAACACGGCATCGAAACGCGCCTGCTGCGGGAGGGCAACGAACGCAGCCTCACCAACTTCTGGCAGCTGGCCGAAC
TGCTCGCCGCCGAAGACGAAGCCGGACACACCCCTGCCTCGCTCCACCAATGGCTCTTGCAAACGATGCAGGACGACAAC
GCTGCCGAACACCACCTGTTGCGCCTCGAAAGCGACGAAGCCCTTGTCAAAATCGTCACCATCCACGCCTCAAAGGGTTT
GCAATATCCCTTCGTTTTCTGCCCCTTCTCGTGGGACACCAGCGAAGCGCCCGCCGACAGATGGCACGTTCTTCACCGCG
CAGACGGCAGCGAACTTCTGGAACTGAGCCAGCTCGACGAAGCCGACCAAAACCAACTGGCCGACGAAGATTTGGGCGAG
CGCCTGCGCCTGCTCTACGTCGCCCTCACCCGCGCCGAAGAGCAGCTCACCGTCTACGCCGCCCGCTGCCGCAGCACGCC
GCGCAACACCTTTGCCTACCTGCTCGAAGGTTCGCCCGACAGCAGCCGCGCCGCCGTTCAGACGGCCTACGAAGAAGAAA
AAGACGGCCAAAGCGCCATGCTGCGCCGCAACTGGCTGCGCTGGACAGAAAGCGCCCCCGCCGACAGCGGCATCCTCTGG
CACGAAGGCGCGCCCGTCAGCGCCGCCGCCGACAGCCGCGGCCGCGGCACGCACACCTACCGCGCCGCCGAATACCCGTC
GCGCCGCTTCGAACTCGTCCGTTTCACCAGCTTCACCGGCCTCACCCGCCGCCTGTCCCATCACCGCGCCGCAGGCGACG
AACTCCAACCCGCCCTCGATCAGGCCGAATCGGCCGCCGCGCCGCCCGCCGCCCCCGCGTCGGACGAAAGCGGAATGCTC
GACCTTTTCCACTTCCCTCGCGGCACGGAAGCGGGCGTCTGCCTGCACGAAATCCTCGAACAGCACGACTTTTCCCGCCC
CGCCGCCGAACAAAGCACCCGCATTGCCGACACCCTCGAGCGCTACGGCTTCCCCGAGCAATGGCTGGAAACCGCCTGCG
CCGCCGCCGACCAAACCGCCGCCGCCGATCTCGGCGCGGGCGACACCCTCGCCGCCCTGCCCGCCGCAAACCGCCTCGCC
GAAATGGGCTTCGTCATGCACTTCGAGCGCCTCGACTTAGGCCGTCTGAAAAACAGCCTTACCGCTGCCGGGCTGCCCCC
CGTCTGCCTTGCCGCCGCAGAACACCTCGACTTCGACACCCTGCAAGGCTTTCTCAACGGCTTTATCGACATGACCTGCC
TGCTTTCAGACGGCCAACCCTGCGTGATCGACTACAAATCCAACCACCTCGGCAACCACCCCGACGACTACGCCCCCGCC
GCCCTCGATGCCGCCGTGGCCGAACACCACTACTACCTGCAAGCCTGGATTTACGCGCTGGCCGTCGCCCGCTACCTCAA
ACAGCGCGGCCGTCCCGTGCAAACCGTCCGCGTCCGCTATCTTTTCCTGCGCGGCCTGAACACGGAAAACCGCAACGGCA
TCTGGCAGTGGGACATTGCTGCGGAACACCTCGCCCCCTGGCTGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(450-820)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(16-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

50.662

100

0.515

Multiple sequence alignment