Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ACF2JY_RS08205 Genome accession   NZ_CP172966
Coordinates   1551703..1552086 (+) Length   127 a.a.
NCBI ID   WP_046160582.1    Uniprot ID   A0AA96UKP5
Organism   Bacillus subtilis strain cel     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1546703..1557086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS08170 (ACF2JY_08170) corA 1547157..1548110 (+) 954 WP_004399136.1 magnesium transporter CorA -
  ACF2JY_RS08175 (ACF2JY_08175) - 1548112..1548309 (+) 198 WP_014480259.1 CBS domain-containing protein -
  ACF2JY_RS08180 (ACF2JY_08180) comGA 1548521..1549591 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ACF2JY_RS08185 (ACF2JY_08185) comGB 1549578..1550615 (+) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  ACF2JY_RS08190 (ACF2JY_08190) comGC 1550629..1550925 (+) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  ACF2JY_RS08195 (ACF2JY_08195) comGD 1550915..1551346 (+) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  ACF2JY_RS08200 (ACF2JY_08200) comGE 1551330..1551677 (+) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  ACF2JY_RS08205 (ACF2JY_08205) comGF 1551703..1552086 (+) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  ACF2JY_RS08210 (ACF2JY_08210) comGG 1552087..1552461 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  ACF2JY_RS08215 (ACF2JY_08215) spoIITA 1552533..1552712 (+) 180 WP_029726723.1 YqzE family protein -
  ACF2JY_RS08220 (ACF2JY_08220) yqzG 1552754..1553080 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACF2JY_RS08225 (ACF2JY_08225) tapA 1553352..1554113 (+) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  ACF2JY_RS08230 (ACF2JY_08230) sipW 1554097..1554669 (+) 573 WP_003230181.1 signal peptidase I SipW -
  ACF2JY_RS08235 (ACF2JY_08235) tasA 1554733..1555518 (+) 786 WP_014664586.1 biofilm matrix protein TasA -
  ACF2JY_RS08240 (ACF2JY_08240) sinR 1555611..1555946 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACF2JY_RS08245 (ACF2JY_08245) sinI 1555980..1556153 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14306.38 Da        Isoelectric Point: 5.5289

>NTDB_id=1069704 ACF2JY_RS08205 WP_046160582.1 1551703..1552086(+) (comGF) [Bacillus subtilis strain cel]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYQSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1069704 ACF2JY_RS08205 WP_046160582.1 1551703..1552086(+) (comGF) [Bacillus subtilis strain cel]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCAATCAATGATAAGAAAAAGAGTGGATGGT
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

98.425

100

0.984

Multiple sequence alignment