Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACF2JY_RS04020 Genome accession   NZ_CP172966
Coordinates   796556..797200 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain cel     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 791556..802200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS03990 (ACF2JY_03990) - 791906..792274 (-) 369 WP_046381300.1 hypothetical protein -
  ACF2JY_RS03995 (ACF2JY_03995) - 792389..792514 (-) 126 WP_003228793.1 hypothetical protein -
  ACF2JY_RS04000 (ACF2JY_04000) degQ 792736..792876 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACF2JY_RS04005 (ACF2JY_04005) - 793061..793924 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  ACF2JY_RS04010 (ACF2JY_04010) comX 793926..794147 (+) 222 WP_014480704.1 competence pheromone ComX -
  ACF2JY_RS04015 (ACF2JY_04015) comP 794163..796475 (+) 2313 WP_041332996.1 sensor histidine kinase Regulator
  ACF2JY_RS04020 (ACF2JY_04020) comA 796556..797200 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACF2JY_RS04025 (ACF2JY_04025) yuxO 797219..797599 (+) 381 WP_014477831.1 hotdog fold thioesterase -
  ACF2JY_RS04030 (ACF2JY_04030) mnhG 797640..798014 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ACF2JY_RS04035 (ACF2JY_04035) mrpF 797998..798282 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACF2JY_RS04040 (ACF2JY_04040) mrpE 798282..798758 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ACF2JY_RS04045 (ACF2JY_04045) mrpD 798764..800245 (-) 1482 WP_046381299.1 Na+/H+ antiporter subunit D -
  ACF2JY_RS04050 (ACF2JY_04050) mrpC 800238..800579 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACF2JY_RS04055 (ACF2JY_04055) mrpB 800579..801010 (-) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1069685 ACF2JY_RS04020 WP_003220716.1 796556..797200(+) (comA) [Bacillus subtilis strain cel]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1069685 ACF2JY_RS04020 WP_003220716.1 796556..797200(+) (comA) [Bacillus subtilis strain cel]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment