Detailed information    

insolico Bioinformatically predicted

Overview


Name   degQ   Type   Regulator
Locus tag   ACF2JY_RS04000 Genome accession   NZ_CP172966
Coordinates   792736..792876 (+) Length   46 a.a.
NCBI ID   WP_003220708.1    Uniprot ID   G4P060
Organism   Bacillus subtilis strain cel     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 787736..797876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS03970 (ACF2JY_03970) yueI 788030..788428 (+) 399 WP_015251331.1 YueI family protein -
  ACF2JY_RS03975 (ACF2JY_03975) pncA 788525..789076 (+) 552 WP_014477836.1 cysteine hydrolase family protein -
  ACF2JY_RS03980 (ACF2JY_03980) pncB 789092..790564 (+) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  ACF2JY_RS03985 (ACF2JY_03985) pdeH 790701..791930 (+) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  ACF2JY_RS03990 (ACF2JY_03990) - 791906..792274 (-) 369 WP_046381300.1 hypothetical protein -
  ACF2JY_RS03995 (ACF2JY_03995) - 792389..792514 (-) 126 WP_003228793.1 hypothetical protein -
  ACF2JY_RS04000 (ACF2JY_04000) degQ 792736..792876 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACF2JY_RS04005 (ACF2JY_04005) - 793061..793924 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  ACF2JY_RS04010 (ACF2JY_04010) comX 793926..794147 (+) 222 WP_014480704.1 competence pheromone ComX -
  ACF2JY_RS04015 (ACF2JY_04015) comP 794163..796475 (+) 2313 WP_041332996.1 sensor histidine kinase Regulator
  ACF2JY_RS04020 (ACF2JY_04020) comA 796556..797200 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACF2JY_RS04025 (ACF2JY_04025) yuxO 797219..797599 (+) 381 WP_014477831.1 hotdog fold thioesterase -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5546.44 Da        Isoelectric Point: 6.2559

>NTDB_id=1069683 ACF2JY_RS04000 WP_003220708.1 792736..792876(+) (degQ) [Bacillus subtilis strain cel]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=1069683 ACF2JY_RS04000 WP_003220708.1 792736..792876(+) (degQ) [Bacillus subtilis strain cel]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAACTCGATAAATACAATTATGCAATGAAAATTTCGTGA

Domains


Predicted by InterproScan.

(1-46)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G4P060

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment