Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AADG46_RS17885 Genome accession   NZ_AP028806
Coordinates   728109..729203 (-) Length   364 a.a.
NCBI ID   WP_114709149.1    Uniprot ID   -
Organism   Vibrio cholerae strain VN152     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 723109..734203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS17875 (VNVC001_33600) - 724861..725526 (+) 666 WP_340702024.1 flagellar brake protein -
  AADG46_RS17880 (VNVC001_33610) luxQ 725518..728091 (-) 2574 WP_085603326.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  AADG46_RS17885 (VNVC001_33620) luxP 728109..729203 (-) 1095 WP_114709149.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AADG46_RS17890 (VNVC001_33630) traF 729415..730575 (-) 1161 WP_114793959.1 conjugal transfer protein TraF -
  AADG46_RS17895 (VNVC001_33640) - 730677..730982 (-) 306 WP_000448830.1 GIY-YIG nuclease family protein -
  AADG46_RS17900 (VNVC001_33650) - 730982..731632 (-) 651 WP_001025625.1 YceH family protein -
  AADG46_RS17905 (VNVC001_33660) - 731674..731871 (-) 198 WP_001246071.1 hypothetical protein -
  AADG46_RS17910 (VNVC001_33670) - 732059..732379 (+) 321 WP_001089529.1 DUF496 family protein -
  AADG46_RS17915 (VNVC001_33680) - 732792..733043 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41271.94 Da        Isoelectric Point: 6.5074

>NTDB_id=106938 AADG46_RS17885 WP_114709149.1 728109..729203(-) (luxP) [Vibrio cholerae strain VN152]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKSVPLVYSGDFEVVTKQDSVARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=106938 AADG46_RS17885 WP_114709149.1 728109..729203(-) (luxP) [Vibrio cholerae strain VN152]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTCCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCAGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACAGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAATCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
TGTAGCGCGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.626

100

0.986

Multiple sequence alignment