Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   AADG46_RS08155 Genome accession   NZ_AP028804
Coordinates   1811121..1814465 (-) Length   1114 a.a.
NCBI ID   WP_340701741.1    Uniprot ID   -
Organism   Vibrio cholerae strain VN152     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806121..1819465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS08135 (VNVC001_15470) - 1806929..1807357 (+) 429 WP_000929906.1 HIT domain-containing protein -
  AADG46_RS08140 (VNVC001_15480) - 1807619..1807849 (-) 231 WP_114741126.1 FeoC-like transcriptional regulator -
  AADG46_RS08145 (VNVC001_15490) feoB 1807846..1810122 (-) 2277 WP_001914545.1 Fe(2+) transporter permease subunit FeoB -
  AADG46_RS08150 (VNVC001_15500) - 1810119..1810349 (-) 231 WP_000777870.1 ferrous iron transport protein A -
  AADG46_RS08155 (VNVC001_15520) tfoS 1811121..1814465 (-) 3345 WP_340701741.1 helix-turn-helix domain-containing protein Regulator
  AADG46_RS08160 (VNVC001_15530) znuA 1814668..1815552 (-) 885 WP_000952847.1 zinc ABC transporter substrate-binding protein ZnuA -
  AADG46_RS08165 (VNVC001_15540) znuC 1815636..1816424 (+) 789 WP_000996145.1 zinc ABC transporter ATP-binding protein ZnuC -
  AADG46_RS08170 (VNVC001_15550) znuB 1816417..1817199 (+) 783 WP_069213027.1 zinc ABC transporter permease subunit ZnuB -
  AADG46_RS08175 (VNVC001_15560) sucD 1817306..1818178 (-) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  AADG46_RS08180 (VNVC001_15570) sucC 1818178..1819344 (-) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126430.04 Da        Isoelectric Point: 6.7772

>NTDB_id=106916 AADG46_RS08155 WP_340701741.1 1811121..1814465(-) (tfoS) [Vibrio cholerae strain VN152]
MFRTLLYGCLLNILIPSLVLALDKSMSIFYPLPIQEQGKVIVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLP
QLSSHIVYANSAFWAFEQHELFRTYPGGERELMLSLTPGTQIIQMGASNGMIWMVDGENFYSYEIRSGRVESLSLHELYQ
LNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFAHVKNSGKHFIQKLYFSHKRRELLVGSKRGALVIDIENKRPPLDR
IGSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQ
FTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEYLWIATEKGLVRYNL
SRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGASDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTE
HGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKDQPEAVTVELIEENIQPLCIAESKQGMWLISTK
GISYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDTSSLIIGSHFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKL
LGYRMSEPLKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQWQRFDWALLNFDQLLPGKYRLKVRSANPTQRYRTEALFD
FEVLQPWYMTFIALVGYVLSVLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILG
NVLDNIDASLRHLSSYAKVRAWSEFEAPFNKVKQELAQLHFMHRGDEDESKYHDLHLLIESALKSWQEEYSKALIKLTYS
GEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEVRNAQAVIVFSDFGAPIQNIDKTMVTLSGSSYPLEELVTRS
GGVLHVLALKERNVIELAWPLATLPELETIHKPEEGEQAAKVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVS
ERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=106916 AADG46_RS08155 WP_340701741.1 1811121..1814465(-) (tfoS) [Vibrio cholerae strain VN152]
GTGTTTCGCACATTGTTGTATGGCTGCTTGCTCAATATCCTGATCCCATCCTTGGTATTGGCATTAGATAAATCTATGTC
TATTTTCTATCCTTTGCCCATTCAAGAGCAGGGGAAAGTTATTGTTGCGCAAAATCTCTACCTCGGTAGTGATGGGGGTA
TTTGGGTACATGATGTTCATGGCAAAGTGATGTACTTTGATGGACAAAACGTCTTGCCTCGTCGTGGTTCTGTTCTGCCG
CAGTTGTCCAGTCATATTGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCCGG
GGGAGAAAGAGAGCTGATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGTGCCTCAAATGGCATGATCTGGA
TGGTCGATGGGGAAAACTTCTATAGTTATGAGATCCGAAGTGGCCGCGTCGAATCCCTCTCGTTACATGAACTTTATCAG
CTCAATAGTGCCAGCAAGGTCGTGATTAACGATGCGCAGTTTTTAGTCTCGAAATGGGCTTTAGCGACTAATGTTGGGGT
GTATTTATCTGATGAACAAGGTTTTGCCCATGTAAAAAATTCTGGCAAGCACTTTATCCAAAAGCTCTATTTTTCCCATA
AGCGGCGAGAGCTGTTAGTTGGGTCTAAACGTGGCGCGTTAGTCATTGATATTGAAAATAAACGTCCACCACTGGATAGA
ATTGGTTCCTCCCATGTCCTCTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGGCTCTTTGTTTA
CTCTTTTATCACCGGGAAAATCGTGCAACTTGAGAGTAACAACCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACG
CCATGGTTAATGACTTTCAAGGTGGGATGTGGATAGGAACTGACAAGGGGATTTTTTATTACTCCCTATTTGGTCAGCAG
TTTACTCGGTATCCGGCACAAGCGTTATCTAACGACGGAAGTAAAACACCGATCGGTAAAATAGCCGCTCTTAACTCGGA
TGGAGACTATCTGGCGATAACCGCACAAGGCCTGTATAACTTCAATTTTTCAGATGAGCTACGTAAGCATCTTATCTATC
CAGGTAAAGTAAATGATTTTGTGATTGCCCAAGAGTATCTCTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTC
AGTCGTCGTAGTATTGATACGCCCAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAGCATCTGAGCTTAGATAGTGA
CGGTAACTTATGGGGGGCAAGTGATTACCAAATATGGTCATACTCACTCTCTGAAAAAAATTATCGAGATTATGGTTCTG
AATGGATGGTGAAGGCTTTTTCTCCATCACGGATCACTCTGCTTGCCGCAGTAAAAGACGGCATAGTGATTGGGACAGAA
CATGGCGCTTATTCCCTGCTTGAAAAACAGATCCGCTTTGATTTTTCGAGTCATCGCTATGGTGAGATTTTACAAGTTGC
TGAAGATTCTTCAGGCCACATTTGGCTTGTTGGCTCTTATGGGGTTTTTCAGTGGCGTAAAGATCAACCCGAAGCTGTCA
CTGTCGAGTTAATTGAAGAGAATATACAGCCTTTGTGTATTGCTGAGTCTAAGCAGGGGATGTGGCTTATCTCCACCAAA
GGGATCAGTTATTACCGTAATCAAGAGCTCACTAAGCATTTTGGGGCTCCTTATGGACTGATCAGTAATGAGTTCTTGTC
TGCATCGTGTGCGGTGGGTGAGGAGCAAGATACCTCATCGTTGATCATAGGATCGCATTTTGGTGTAGTGAAAACCAATA
CAGAAGAATTAGCGGTGTCTAATTTGCCCAATATTCAGGTGACGTTTAGCCAAGTCAGCGTAAATCATACGACCAAGCTT
TTGGGGTATCGTATGTCCGAGCCACTAAAAATTGCTTATGGTGATTCGATCAGCTTTCAGTTTGGCGCTTTACCCTCTTC
ACGCAGCCAATCTTTAGAATACAAACTCAACGATGAACAGCAGTGGCAGCGCTTTGATTGGGCGCTGCTCAATTTTGATC
AACTTTTACCTGGTAAGTATCGTTTGAAAGTCCGTAGCGCCAATCCGACACAGCGATACCGAACTGAGGCCCTGTTTGAT
TTTGAAGTCTTACAGCCTTGGTATATGACCTTCATCGCGCTTGTCGGATATGTGCTGAGCGTGTTGGGGCTATTAGCACT
CGCTTTATGGTGGCGAACAAGAATGATATTGGCAGCTAACCGCAAACTCAAAGCGCAAGTGGAGCTCAAAACCAGTCAGT
TACGTCATCAAAGTAAAATTGTACTGAGCAACAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGT
AACGTGTTAGACAATATTGATGCTTCATTGCGGCACTTATCTTCCTACGCCAAAGTACGAGCATGGAGTGAATTTGAAGC
ACCGTTCAACAAGGTGAAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAGGATGAAAGCAAATATCATG
ATTTGCATCTTTTGATTGAGTCTGCATTGAAGAGTTGGCAGGAAGAGTACAGTAAAGCCTTGATTAAGCTAACTTACAGC
GGTGAGCCTCGCTTTGTGGAAGTCCGACAATTCAACCTTGATGTGTTATTTAATGCTGTATTAACGGATGCGATCAAACG
TTTGTATAAGCATCAAGAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTGTTTTCTGATTTTGGTG
CCCCAATCCAAAACATAGACAAAACCATGGTGACGTTATCTGGTAGTAGTTATCCGCTTGAAGAGTTAGTCACTCGTAGT
GGTGGTGTATTGCATGTGCTCGCGTTGAAAGAGCGTAATGTGATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTT
AGAAACCATTCATAAACCAGAAGAAGGGGAACAGGCGGCTAAGGTTGGGATCGATGAGGTGGAGAAAGAGTGGCTAAGCA
AAGTCGAGAAACTGATTGAGCTGCATTATAGCGACCCCAATTTCACCACATCCACTGCAGCGCAGGCGCTTTATGTCTCT
GAACGAAGTTTACAGCGTCGCTTTAAAGCCGCGACAGGAAAAACCTTCAAAGAGTCGTTAAATGAGGTTCGCTTAGAAAA
AGCGTGTCAAAGCTTATTGAGTGGGGCGAAAATCGCACAAGTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCA
GTCAGCGTTTCAAACATCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1034-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

99.461

100

0.995

Multiple sequence alignment