Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   ACF1RT_RS03830 Genome accession   NZ_CP172847
Coordinates   755099..755992 (-) Length   297 a.a.
NCBI ID   WP_226711025.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 750099..760992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS03805 (ACF1RT_03805) cas1 750440..751306 (+) 867 WP_002269449.1 type II CRISPR-associated endonuclease Cas1 -
  ACF1RT_RS03810 (ACF1RT_03810) cas2 751303..751647 (+) 345 WP_002263547.1 CRISPR-associated endonuclease Cas2 -
  ACF1RT_RS03815 (ACF1RT_03815) csn2 751637..752299 (+) 663 WP_226711026.1 type II-A CRISPR-associated protein Csn2 -
  ACF1RT_RS03820 (ACF1RT_03820) - 752396..752587 (+) 192 WP_002264916.1 type II toxin-antitoxin system HicA family toxin -
  ACF1RT_RS03825 (ACF1RT_03825) - 752605..752982 (+) 378 WP_002265422.1 type II toxin-antitoxin system HicB family antitoxin -
  ACF1RT_RS03830 (ACF1RT_03830) irvR 755099..755992 (-) 894 WP_226711025.1 LexA family transcriptional regulator IrvR Regulator
  ACF1RT_RS03835 (ACF1RT_03835) - 756307..756591 (+) 285 WP_002302225.1 helix-turn-helix transcriptional regulator -
  ACF1RT_RS03840 (ACF1RT_03840) gbpC 756754..758505 (+) 1752 WP_226711024.1 glucan-binding protein GbpC -
  ACF1RT_RS03845 (ACF1RT_03845) - 758635..758865 (+) 231 WP_002278030.1 hypothetical protein -
  ACF1RT_RS03850 (ACF1RT_03850) - 758900..759028 (+) 129 WP_019319737.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33641.32 Da        Isoelectric Point: 6.7036

>NTDB_id=1069085 ACF1RT_RS03830 WP_226711025.1 755099..755992(-) (irvR) [Streptococcus mutans strain DPC6143]
MGRGKLTPQDLEAMKAISSNLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFA
SKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDETTDDKVADKSNHTQYQKVVDSFIAKELNDQTI
IHWDNVIKAKDLYQTFGRQYENIQIYGEVSAGTGIWVGHEKQETIKYPIPIPEHDIALTVNGNSMEPLFYNGDVIFVKKT
KAIHHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKEDDTIEVIGTVIT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1069085 ACF1RT_RS03830 WP_226711025.1 755099..755992(-) (irvR) [Streptococcus mutans strain DPC6143]
ATGGGACGCGGTAAATTAACTCCACAAGATTTAGAAGCAATGAAGGCTATTTCTTCCAATCTTCAAAGACTTCTAGCTGA
GAGCGGAATGAAACAATCTCACTTAGCTACTATTCTTAACATTCCTACAAGTAGTCTTAACGAATATGTTAAAGGAAAGA
GTTTGCCAAAAATAGGGAATATTCAAAAAATCGCAGATTACTTTGGTTTACAAAAATCCGATATTGACCCTAGATTTGCA
AGTAAAAAGGACTCTTCTACTCTTGATAAAATTAATCATATTGCCAAACAATTAGAAATGAAGAGACAGATAAAAGTCTT
AGATTTCTGTTATCAACAATCAAAAGAACAAGATGAAACAGCAAGCTTGTCTGCCAGTGATGAAACGACTGATGATAAAG
TTGCTGACAAATCAAATCATACGCAGTATCAAAAGGTTGTTGATTCTTTTATTGCCAAAGAATTAAACGATCAGACAATT
ATTCATTGGGATAATGTGATAAAAGCTAAGGATTTGTATCAAACCTTTGGACGTCAATACGAAAACATTCAGATTTATGG
TGAAGTTTCAGCTGGTACTGGTATCTGGGTTGGACATGAAAAACAAGAAACCATTAAATACCCAATACCAATTCCAGAAC
ATGATATTGCTCTTACTGTCAATGGTAATAGTATGGAACCTTTATTTTACAACGGTGACGTTATTTTTGTTAAAAAGACT
AAAGCTATCCATCACGGACAAATTATCGTTGTTATTGTAAATAATGAGGCATATGTCAAAAAACTCTACCGAAAAAACAA
AGAAATTCGACTCATCTCATTAAATCCAGATTATGATGACATCATTTTAAAAGAAGATGATACAATTGAAGTCATCGGAA
CGGTCATTACCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(22-70)

Peptidase S24-like (Peptidase_S24)

(184-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

98.99

100

0.99

Multiple sequence alignment