Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   ACF1RT_RS01660 Genome accession   NZ_CP172847
Coordinates   328433..328789 (-) Length   118 a.a.
NCBI ID   WP_002262669.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 323433..333789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS01625 (ACF1RT_01625) - 324725..324928 (-) 204 WP_315685160.1 hypothetical protein -
  ACF1RT_RS01630 (ACF1RT_01630) - 325233..325478 (+) 246 WP_002263367.1 hypothetical protein -
  ACF1RT_RS01635 (ACF1RT_01635) rpsF 325634..325924 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  ACF1RT_RS01640 (ACF1RT_01640) ssbA 325942..326436 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  ACF1RT_RS01645 (ACF1RT_01645) rpsR 326465..326704 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  ACF1RT_RS01650 (ACF1RT_01650) - 327023..327742 (+) 720 WP_002262671.1 TraX family protein -
  ACF1RT_RS01655 (ACF1RT_01655) hdrM 327750..328436 (-) 687 WP_002262670.1 hdrR negative regulator HdrM Regulator
  ACF1RT_RS01660 (ACF1RT_01660) hdrR 328433..328789 (-) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  ACF1RT_RS01665 (ACF1RT_01665) - 328928..329590 (-) 663 WP_002262668.1 DUF1129 domain-containing protein -
  ACF1RT_RS01670 (ACF1RT_01670) - 329873..330817 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -
  ACF1RT_RS01675 (ACF1RT_01675) - 331217..331438 (-) 222 WP_019313410.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14134.45 Da        Isoelectric Point: 10.3603

>NTDB_id=1069074 ACF1RT_RS01660 WP_002262669.1 328433..328789(-) (hdrR) [Streptococcus mutans strain DPC6143]
MEIHLNPKHQSVEVFLEKEIFFLNIRDILFIEINNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=1069074 ACF1RT_RS01660 WP_002262669.1 328433..328789(-) (hdrR) [Streptococcus mutans strain DPC6143]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAACAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

100

100

1

Multiple sequence alignment