Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ACFMPA_RS19370 Genome accession   NZ_CP172605
Coordinates   3744021..3745166 (+) Length   381 a.a.
NCBI ID   WP_029318693.1    Uniprot ID   -
Organism   Bacillus sp. SG20032     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3739021..3750166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMPA_RS19345 (ACFMPA_19345) - 3739036..3740316 (+) 1281 WP_224913066.1 pitrilysin family protein -
  ACFMPA_RS19350 (ACFMPA_19350) albG 3740313..3741014 (+) 702 WP_224913064.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  ACFMPA_RS19355 (ACFMPA_19355) - 3741020..3742396 (-) 1377 WP_151262457.1 YncE family protein -
  ACFMPA_RS19360 (ACFMPA_19360) - 3742436..3743791 (-) 1356 WP_151262458.1 YncE family protein -
  ACFMPA_RS19365 (ACFMPA_19365) - 3743788..3744018 (-) 231 WP_033883387.1 hypothetical protein -
  ACFMPA_RS19370 (ACFMPA_19370) rapF 3744021..3745166 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  ACFMPA_RS19375 (ACFMPA_19375) phrF 3745150..3745269 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  ACFMPA_RS19380 (ACFMPA_19380) - 3745522..3746001 (+) 480 WP_015714892.1 hypothetical protein -
  ACFMPA_RS19385 (ACFMPA_19385) - 3746150..3746938 (+) 789 WP_015714893.1 membrane protein -
  ACFMPA_RS19390 (ACFMPA_19390) - 3746925..3747599 (+) 675 WP_015714894.1 hypothetical protein -
  ACFMPA_RS19395 (ACFMPA_19395) - 3747609..3748406 (+) 798 WP_231573542.1 hypothetical protein -
  ACFMPA_RS19400 (ACFMPA_19400) - 3748409..3749056 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  ACFMPA_RS19405 (ACFMPA_19405) - 3749049..3749609 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45594.05 Da        Isoelectric Point: 5.0624

>NTDB_id=1068258 ACFMPA_RS19370 WP_029318693.1 3744021..3745166(+) (rapF) [Bacillus sp. SG20032]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=1068258 ACFMPA_RS19370 WP_029318693.1 3744021..3745166(+) (rapF) [Bacillus sp. SG20032]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGAATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572

Multiple sequence alignment