Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACFMPA_RS18270 Genome accession   NZ_CP172605
Coordinates   3537499..3538188 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. SG20032     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3532499..3543188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMPA_RS18235 (ACFMPA_18235) flgN 3532680..3533162 (-) 483 WP_032722609.1 flagellar protein FlgN -
  ACFMPA_RS18240 (ACFMPA_18240) flgM 3533178..3533444 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFMPA_RS18245 (ACFMPA_18245) - 3533525..3533944 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACFMPA_RS18250 (ACFMPA_18250) comFC 3534017..3534739 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ACFMPA_RS18255 (ACFMPA_18255) comFB 3534703..3534999 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACFMPA_RS18260 (ACFMPA_18260) comFA 3535059..3536450 (-) 1392 WP_029318788.1 ATP-dependent helicase ComFA Machinery gene
  ACFMPA_RS18265 (ACFMPA_18265) - 3536556..3537401 (-) 846 WP_003244125.1 DegV family protein -
  ACFMPA_RS18270 (ACFMPA_18270) degU 3537499..3538188 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFMPA_RS18275 (ACFMPA_18275) degS 3538271..3539428 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACFMPA_RS18280 (ACFMPA_18280) - 3539645..3540298 (+) 654 WP_003227979.1 YigZ family protein -
  ACFMPA_RS18285 (ACFMPA_18285) tagV 3540298..3541473 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACFMPA_RS18290 (ACFMPA_18290) - 3541546..3542622 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1068253 ACFMPA_RS18270 WP_003219701.1 3537499..3538188(-) (degU) [Bacillus sp. SG20032]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1068253 ACFMPA_RS18270 WP_003219701.1 3537499..3538188(-) (degU) [Bacillus sp. SG20032]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment