Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACFMPA_RS18250 Genome accession   NZ_CP172605
Coordinates   3534017..3534739 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus sp. SG20032     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529017..3539739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMPA_RS18215 (ACFMPA_18215) fliW 3529157..3529588 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ACFMPA_RS18220 (ACFMPA_18220) - 3529609..3530184 (-) 576 WP_015384781.1 DUF6470 family protein -
  ACFMPA_RS18225 (ACFMPA_18225) flgL 3530231..3531127 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ACFMPA_RS18230 (ACFMPA_18230) flgK 3531138..3532661 (-) 1524 WP_029318789.1 flagellar hook-associated protein FlgK -
  ACFMPA_RS18235 (ACFMPA_18235) flgN 3532680..3533162 (-) 483 WP_032722609.1 flagellar protein FlgN -
  ACFMPA_RS18240 (ACFMPA_18240) flgM 3533178..3533444 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFMPA_RS18245 (ACFMPA_18245) - 3533525..3533944 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACFMPA_RS18250 (ACFMPA_18250) comFC 3534017..3534739 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ACFMPA_RS18255 (ACFMPA_18255) comFB 3534703..3534999 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACFMPA_RS18260 (ACFMPA_18260) comFA 3535059..3536450 (-) 1392 WP_029318788.1 ATP-dependent helicase ComFA Machinery gene
  ACFMPA_RS18265 (ACFMPA_18265) - 3536556..3537401 (-) 846 WP_003244125.1 DegV family protein -
  ACFMPA_RS18270 (ACFMPA_18270) degU 3537499..3538188 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFMPA_RS18275 (ACFMPA_18275) degS 3538271..3539428 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=1068251 ACFMPA_RS18250 WP_014481051.1 3534017..3534739(-) (comFC) [Bacillus sp. SG20032]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1068251 ACFMPA_RS18250 WP_014481051.1 3534017..3534739(-) (comFC) [Bacillus sp. SG20032]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment