Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACFMPA_RS16335 Genome accession   NZ_CP172605
Coordinates   3148702..3149346 (-) Length   214 a.a.
NCBI ID   WP_048654909.1    Uniprot ID   -
Organism   Bacillus sp. SG20032     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3143702..3154346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMPA_RS16300 (ACFMPA_16300) - 3144892..3145323 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ACFMPA_RS16305 (ACFMPA_16305) - 3145323..3145664 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACFMPA_RS16310 (ACFMPA_16310) - 3145657..3147138 (+) 1482 WP_019712488.1 Na+/H+ antiporter subunit D -
  ACFMPA_RS16315 (ACFMPA_16315) - 3147144..3147620 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ACFMPA_RS16320 (ACFMPA_16320) - 3147620..3147904 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACFMPA_RS16325 (ACFMPA_16325) mnhG 3147888..3148262 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  ACFMPA_RS16330 (ACFMPA_16330) - 3148303..3148683 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  ACFMPA_RS16335 (ACFMPA_16335) comA 3148702..3149346 (-) 645 WP_048654909.1 two-component system response regulator ComA Regulator
  ACFMPA_RS16340 (ACFMPA_16340) comP 3149427..3151727 (-) 2301 WP_088300729.1 histidine kinase Regulator
  ACFMPA_RS16345 (ACFMPA_16345) comX 3151739..3151903 (-) 165 WP_015384519.1 competence pheromone ComX -
  ACFMPA_RS16350 (ACFMPA_16350) - 3151916..3152776 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  ACFMPA_RS16355 (ACFMPA_16355) degQ 3152961..3153101 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACFMPA_RS16360 (ACFMPA_16360) - 3153323..3153385 (+) 63 Protein_3156 hypothetical protein -
  ACFMPA_RS16365 (ACFMPA_16365) - 3153563..3153931 (+) 369 WP_050258610.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24147.55 Da        Isoelectric Point: 4.6870

>NTDB_id=1068246 ACFMPA_RS16335 WP_048654909.1 3148702..3149346(-) (comA) [Bacillus sp. SG20032]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQRDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1068246 ACFMPA_RS16335 WP_048654909.1 3148702..3149346(-) (comA) [Bacillus sp. SG20032]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCGTGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995

Multiple sequence alignment