Detailed information NTG1068138

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RSP673_RS15460
• Genome accession: NZ_CP172582
• Coordinates: 3264703..3265584 (+)
• Length: 293 a.a.
• NCBI ID: WP_014616067.1
• Uniprot ID: F6FY26
• Organism: Ralstonia solanacearum P673
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3259703..3270584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RSP673_RS15445 (RSP673_015445)	-	3260138..3261415 (+)	1278	WP_039547221.1	HlyC/CorC family transporter	-
RSP673_RS15450 (RSP673_015450)	pilF	3261663..3263390 (+)	1728	WP_014616069.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RSP673_RS15455 (RSP673_015455)	pilG	3263435..3264700 (+)	1266	WP_014616068.1	type II secretion system F family protein	Machinery gene
RSP673_RS15460 (RSP673_015460)	pilD	3264703..3265584 (+)	882	WP_014616067.1	A24 family peptidase	Machinery gene
RSP673_RS15465 (RSP673_015465)	coaE	3265597..3266211 (+)	615	WP_014616066.1	dephospho-CoA kinase	-
RSP673_RS15470 (RSP673_015470)	zapD	3266329..3267087 (+)	759	WP_003266031.1	cell division protein ZapD	-
RSP673_RS15475 (RSP673_015475)	-	3267104..3267319 (+)	216	WP_003266032.1	DNA gyrase inhibitor YacG	-
RSP673_RS15480 (RSP673_015480)	-	3267312..3267773 (-)	462	WP_014616065.1	NUDIX domain-containing protein	-
RSP673_RS15485 (RSP673_015485)	-	3267751..3268635 (-)	885	WP_014616064.1	ATP-binding protein	-
RSP673_RS15490 (RSP673_015490)	argJ	3268651..3269880 (-)	1230	WP_014616063.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31552.49 Da
• Isoelectric Point: 6.8369

>NTDB_id=1068138 RSP673_RS15460 WP_014616067.1 3264703..3265584(+) (pilD) [Ralstonia solanacearum P673]
MSGMFAIPTLALLPAWFVIGAAALLGLLVGSFLNVVIHRLPSMIEREEANYIAELRDEPLPHPEPYNLVVPRSACPSCGH
QIKAIENIPVISWLALRGRCSACKTPISWRYPAVELVTSVLTGACLWHFGPTWVAVASAVLLWFLIAGTMIDADTQLLPD
AVTQPLLWLGLLVNLFDMFARLPDAVIGAMAGYLFLWAIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQALPLLILLSS
VVGLVFGAARIARGAESDSPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

• Length: 882 bp

>NTDB_id=1068138 RSP673_RS15460 WP_014616067.1 3264703..3265584(+) (pilD) [Ralstonia solanacearum P673]
ATGTCCGGGATGTTCGCCATTCCCACGCTGGCACTGCTGCCCGCGTGGTTCGTGATCGGCGCGGCGGCGCTGCTGGGGCT
GCTGGTCGGCAGCTTCCTCAACGTGGTGATCCACCGCTTGCCGAGCATGATCGAACGCGAGGAGGCCAACTACATCGCCG
AGCTGCGCGACGAGCCACTGCCGCATCCCGAGCCGTACAACCTGGTCGTGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC
CAGATCAAGGCGATCGAGAACATCCCGGTGATCAGTTGGCTGGCATTGCGCGGCCGCTGCAGCGCCTGCAAGACGCCCAT
CTCCTGGCGCTACCCCGCCGTGGAACTGGTGACCAGCGTACTGACCGGCGCCTGCCTGTGGCATTTCGGACCGACCTGGG
TGGCGGTGGCCTCGGCCGTGTTGCTGTGGTTCCTGATCGCCGGCACGATGATCGACGCCGACACGCAACTGCTGCCCGAT
GCCGTCACCCAGCCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCGACATGTTCGCGCGGCTGCCGGACGCGGTGAT
CGGCGCGATGGCCGGGTATCTGTTCCTGTGGGCCATCTACTGGGCCTACAAGCTGCTGCGCGGCCGGGAAGGCATGGGCT
ACGGCGACTTCAAGCTGATGGCCGCGCTCGGTGCCTGGTTCGGCTGGCAGGCGCTGCCGTTGCTGATCCTGCTGTCGTCG
GTGGTCGGCCTGGTGTTCGGGGCGGCGCGCATCGCGCGTGGCGCCGAAAGCGACTCACCGTTTTCGTTCGGCCCGTTCAT
CGCGGGCGCCGGCGTCATCGCCCTGCTGGCTGGCCCACAGCTGGTGGCATTGACGGGACTCGCACCGCTGCTGGCGCGGT
AA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

• Type IV leader peptidase family (Peptidase_A24) (140-247)

3D structure

• AlphaFold DB: F6FY26

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.585	90.444	0.485
pilD	Vibrio campbellii strain DS40M4	50.549	93.174	0.471
pilD	Neisseria gonorrhoeae MS11	49.627	91.468	0.454
pilD	Acinetobacter baumannii D1279779	46.992	90.785	0.427
pilD	Acinetobacter nosocomialis M2	46.617	90.785	0.423