Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACG2XO_RS13705 Genome accession   NZ_CP172558
Coordinates   2914964..2916331 (-) Length   455 a.a.
NCBI ID   WP_410498552.1    Uniprot ID   -
Organism   Chitinibacter sp. S2-10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2909964..2921331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2XO_RS13670 (ACG2XO_13675) - 2910587..2911192 (-) 606 WP_410498545.1 flavin prenyltransferase UbiX -
  ACG2XO_RS13675 (ACG2XO_13680) - 2911185..2911724 (-) 540 WP_410498546.1 Gx transporter family protein -
  ACG2XO_RS13680 (ACG2XO_13685) - 2911705..2912091 (-) 387 WP_410498547.1 NusG domain II-containing protein -
  ACG2XO_RS13685 (ACG2XO_13690) rapZ 2912078..2912944 (-) 867 WP_410498548.1 RNase adapter RapZ -
  ACG2XO_RS13690 (ACG2XO_13695) hprK 2912941..2913885 (-) 945 WP_410498549.1 HPr(Ser) kinase/phosphatase -
  ACG2XO_RS13695 (ACG2XO_13700) - 2913968..2914441 (-) 474 WP_410498550.1 PTS sugar transporter subunit IIA -
  ACG2XO_RS13700 (ACG2XO_13705) hpf 2914606..2914932 (-) 327 WP_410498551.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACG2XO_RS13705 (ACG2XO_13710) rpoN/rpoN1 2914964..2916331 (-) 1368 WP_410498552.1 RNA polymerase factor sigma-54 Machinery gene
  ACG2XO_RS13710 (ACG2XO_13715) lptB 2916368..2917090 (-) 723 WP_410498553.1 LPS export ABC transporter ATP-binding protein -
  ACG2XO_RS13715 (ACG2XO_13720) lptA 2917096..2917614 (-) 519 WP_410498554.1 lipopolysaccharide transport periplasmic protein LptA -
  ACG2XO_RS13720 (ACG2XO_13725) lptC 2917568..2918167 (-) 600 WP_410498555.1 LPS export ABC transporter periplasmic protein LptC -
  ACG2XO_RS13725 (ACG2XO_13730) kdsC 2918177..2918704 (-) 528 WP_410498556.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ACG2XO_RS13730 (ACG2XO_13735) - 2918771..2919736 (-) 966 WP_410498557.1 KpsF/GutQ family sugar-phosphate isomerase -
  ACG2XO_RS13735 (ACG2XO_13740) - 2919865..2919978 (+) 114 WP_410500267.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 51152.89 Da        Isoelectric Point: 4.5013

>NTDB_id=1068041 ACG2XO_RS13705 WP_410498552.1 2914964..2916331(-) (rpoN/rpoN1) [Chitinibacter sp. S2-10]
MSQQLNLTPQLQQSIKLLQLSTLEFNQELDQYLADNPLLEREEMGGDSVETQEQTPSEVNDYSAEDQDGLRWDDVRSGSS
FDDDDEHDPTLRVAIEDTLRDYLLAQARLLGLSERDHALLALLVEALDEDGLLVQELDEIFSQLPQDLITELELEPEELR
TAHQYLMQLEPLGVGARSLSECLLLQLKAVPPSAAVALAKSLIENGLELLAVRDFVRLKKQLQCNDEQLRQAQQIVRSLN
PRPAANWGGDTTRYVVPDVLVQKVRGRWIARLNQAAQPKLKVNEMYARLLQGDAGESLAGQLQEARWLIKSIEQRGSTIL
RVAQAIVERQQAFFEYGEVAMKPLVLRDIADELDLHESTISRVTTQKFMLTPRGVLEYKYFFGSHVENDNGGENSATAIK
ALIKQLVAQENPKKPLSDNAITEELARQGVAVARRTVAKYRESLNIVPASQRKSL

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1068041 ACG2XO_RS13705 WP_410498552.1 2914964..2916331(-) (rpoN/rpoN1) [Chitinibacter sp. S2-10]
ATGTCGCAACAGCTTAATCTGACTCCCCAACTGCAACAGTCGATCAAACTGTTGCAGCTTTCCACGCTTGAATTTAATCA
AGAACTTGACCAGTATCTGGCGGATAACCCATTGCTCGAACGTGAGGAAATGGGGGGGGACTCGGTCGAAACGCAGGAGC
AAACGCCCTCCGAGGTCAATGATTACAGCGCTGAAGATCAGGATGGCTTGCGCTGGGATGATGTCAGAAGTGGCTCGTCA
TTTGACGATGACGACGAACATGATCCCACTTTGCGAGTTGCGATTGAAGATACTTTGCGCGATTACCTGCTTGCTCAGGC
GCGTTTGCTGGGATTGTCAGAGCGCGATCATGCCTTGCTCGCCTTGCTGGTCGAGGCGCTGGATGAAGACGGCTTGCTGG
TGCAGGAACTGGATGAAATTTTCTCGCAACTCCCGCAAGATTTGATCACTGAACTGGAGCTGGAGCCGGAGGAACTCAGG
ACGGCGCATCAGTATCTGATGCAGCTGGAGCCTTTGGGTGTTGGCGCGCGCAGCCTGTCTGAATGTCTTTTGCTTCAGCT
CAAAGCCGTGCCCCCATCTGCTGCTGTAGCTTTGGCAAAAAGCCTGATTGAAAATGGACTCGAATTGTTGGCAGTGCGTG
ATTTCGTCAGGCTTAAGAAGCAATTGCAGTGTAATGATGAGCAATTGCGTCAGGCACAACAAATTGTCCGGAGTTTGAAT
CCGCGCCCGGCAGCCAACTGGGGAGGCGATACCACCCGGTATGTTGTACCGGATGTACTGGTGCAGAAAGTCCGAGGACG
CTGGATTGCTCGCCTCAATCAGGCCGCACAGCCCAAACTGAAAGTGAATGAAATGTACGCCCGTTTATTACAGGGTGATG
CTGGCGAGAGTCTGGCCGGGCAGCTTCAGGAGGCTAGGTGGCTAATCAAGAGCATAGAGCAGCGCGGTAGTACGATTTTG
CGCGTTGCTCAAGCGATTGTCGAACGTCAGCAGGCTTTTTTCGAATATGGTGAAGTGGCAATGAAGCCACTGGTATTGCG
TGATATTGCCGATGAACTTGATTTGCATGAATCGACGATTTCACGGGTGACAACACAAAAATTTATGCTGACACCACGGG
GTGTTCTGGAGTACAAATACTTCTTCGGCAGCCATGTTGAAAATGACAATGGCGGGGAAAATTCGGCGACAGCGATCAAA
GCCTTGATCAAACAACTGGTCGCCCAGGAAAATCCGAAGAAACCTTTATCGGATAATGCTATAACAGAAGAACTCGCAAG
GCAGGGTGTTGCAGTAGCGCGGCGCACCGTGGCCAAGTACCGGGAGTCACTGAATATCGTGCCTGCCAGCCAGCGCAAAA
GCCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(1-40)

Sigma-54, DNA binding domain (Sigma54_DBD)

(299-453)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(95-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.6

100

0.534

Multiple sequence alignment