Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACG2XO_RS06860 Genome accession   NZ_CP172558
Coordinates   1430416..1431786 (+) Length   456 a.a.
NCBI ID   WP_410500069.1    Uniprot ID   -
Organism   Chitinibacter sp. S2-10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1425416..1436786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2XO_RS06835 (ACG2XO_06835) - 1425586..1426323 (+) 738 WP_410500064.1 pteridine reductase -
  ACG2XO_RS06840 (ACG2XO_06840) ttcA 1426429..1427373 (+) 945 WP_410500065.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  ACG2XO_RS06845 (ACG2XO_06845) - 1427373..1428161 (+) 789 WP_410500066.1 fused MFS/spermidine synthase -
  ACG2XO_RS06850 (ACG2XO_06850) - 1428292..1428795 (+) 504 WP_410500067.1 RNA pyrophosphohydrolase -
  ACG2XO_RS06855 (ACG2XO_06855) - 1428849..1430432 (+) 1584 WP_410500068.1 sensor histidine kinase -
  ACG2XO_RS06860 (ACG2XO_06860) pilR 1430416..1431786 (+) 1371 WP_410500069.1 sigma-54-dependent transcriptional regulator Regulator
  ACG2XO_RS06865 (ACG2XO_06865) ampD 1431861..1432439 (+) 579 WP_410500070.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACG2XO_RS06870 (ACG2XO_06870) - 1432545..1434437 (+) 1893 WP_410500071.1 potassium transporter Kup -
  ACG2XO_RS06875 (ACG2XO_06875) - 1434449..1435081 (-) 633 WP_410500072.1 pyrimidine 5'-nucleotidase -
  ACG2XO_RS06880 (ACG2XO_06880) - 1435129..1435575 (-) 447 WP_410500073.1 CBS domain-containing protein -
  ACG2XO_RS06885 (ACG2XO_06885) argB 1435687..1436565 (-) 879 WP_410500074.1 acetylglutamate kinase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50175.86 Da        Isoelectric Point: 6.0789

>NTDB_id=1068035 ACG2XO_RS06860 WP_410500069.1 1430416..1431786(+) (pilR) [Chitinibacter sp. S2-10]
MAKKSKALPRVLVVDDEADLADLLELTLLKMGLDVVKASGVVMAKAQLDKAHFDLCLSDMRMPDGEGLELVRHIQARKLD
VPIAILTAYGSTENAIAALKAGAFDYLAKPVALEQLRTLVKSALKLDSPEVTEVVNDSPLLGNSPALLHVLGLVDKLARN
LAPVYITGESGSGKERAARLIHAKSARADKPFIAVNCGAIPENLMESEFFGYRKGAFTGANEDREGFFQAANGGTLFLDE
VADLPLAMQVKLLRAIQERKVRQIGGTSELDVDVRIISATHQNLSRCVEAGKFRQDLYYRLNVIELTMPPLREMGDDILL
IAQAVLKKLALRHRMSLPELQPDAQAALRNYDYPGNVRELENLLERALTLSDGLHIYADDLHIVQTVAERAEAQAANLGD
TYPLQDYLDRVEKTAIMAALDKTHFNRTQAAKLLGITFRSMRYRLDRLGITQGSDD

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1068035 ACG2XO_RS06860 WP_410500069.1 1430416..1431786(+) (pilR) [Chitinibacter sp. S2-10]
ATGGCCAAAAAATCTAAAGCCTTACCCAGAGTGCTTGTCGTCGACGACGAAGCCGATCTGGCTGATCTGCTGGAATTGAC
CCTCTTGAAAATGGGGCTGGACGTCGTCAAGGCCAGCGGCGTCGTGATGGCCAAAGCGCAGCTTGATAAAGCGCATTTTG
ACTTATGCCTATCCGATATGCGGATGCCTGATGGCGAAGGTCTGGAACTGGTTCGGCATATTCAGGCGCGCAAACTCGAT
GTGCCGATTGCGATTCTGACCGCCTATGGCAGTACCGAAAATGCGATTGCCGCACTCAAGGCGGGGGCCTTCGATTATCT
GGCCAAGCCGGTGGCGCTCGAGCAGCTGCGTACACTGGTGAAGTCGGCCTTGAAGCTCGATTCGCCCGAAGTCACCGAGG
TGGTTAACGACAGTCCCTTGCTGGGCAATTCGCCGGCTTTATTGCATGTACTGGGTCTGGTCGACAAACTCGCACGCAAT
CTGGCACCAGTTTATATCACTGGCGAATCCGGTTCGGGTAAAGAGCGGGCGGCACGGCTGATTCATGCCAAATCGGCGCG
CGCTGACAAACCGTTCATTGCCGTCAATTGCGGCGCCATTCCCGAAAATCTGATGGAGAGCGAGTTTTTTGGTTATCGCA
AAGGGGCTTTTACCGGCGCGAATGAAGACCGGGAAGGTTTCTTTCAGGCCGCCAACGGCGGCACGCTGTTTCTCGATGAA
GTGGCCGATTTACCGCTGGCGATGCAGGTGAAATTATTGCGCGCGATTCAGGAGCGAAAAGTGCGCCAGATTGGCGGCAC
CAGCGAGCTCGACGTTGATGTGCGGATTATTTCGGCGACGCATCAGAATCTGAGCCGTTGTGTCGAAGCCGGCAAATTCA
GGCAGGATTTGTATTACCGTCTGAATGTGATCGAGCTGACCATGCCGCCGCTGCGCGAAATGGGCGACGATATTTTGCTG
ATCGCGCAAGCCGTGCTGAAAAAGCTCGCGCTGCGTCATCGCATGAGTCTGCCCGAATTGCAGCCCGATGCCCAGGCGGC
GCTGCGCAACTATGACTACCCAGGCAATGTTCGCGAACTGGAAAACCTGCTGGAGCGGGCACTGACTTTGTCCGATGGTT
TACACATTTATGCTGACGATTTGCATATTGTGCAAACAGTCGCTGAACGCGCTGAAGCCCAGGCGGCCAATCTGGGCGAT
ACCTACCCCTTGCAGGACTATCTGGATCGGGTCGAAAAAACCGCAATTATGGCCGCGTTGGATAAAACCCATTTCAACCG
TACCCAGGCGGCCAAACTGCTGGGGATTACTTTTCGCAGTATGCGTTACCGGCTCGACAGGCTGGGAATTACGCAGGGCA
GTGATGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(408-447)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.596

96.711

0.557
  pilR Acinetobacter baumannii strain A118

46.522

100

0.469

Multiple sequence alignment