Detailed information NTG1067728

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACH45O_RS26080
• Genome accession: NZ_CP172430
• Coordinates: 5768563..5769891 (+)
• Length: 442 a.a.
• NCBI ID: WP_397432983.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ZL3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5763563..5774891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH45O_RS26060 (ACH45O_26060)	pgeF	5765051..5765776 (-)	726	WP_397432977.1	peptidoglycan editing factor PgeF	-
ACH45O_RS26065 (ACH45O_26065)	rluD	5765773..5766735 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACH45O_RS26070 (ACH45O_26070)	-	5766888..5767910 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
ACH45O_RS26075 (ACH45O_26075)	-	5768045..5768278 (+)	234	WP_096375492.1	PP0621 family protein	-
ACH45O_RS26080 (ACH45O_26080)	pilR	5768563..5769891 (+)	1329	WP_397432983.1	sigma-54-dependent transcriptional regulator	Regulator
ACH45O_RS26085 (ACH45O_26085)	thiO	5769888..5770988 (-)	1101	WP_397432986.1	glycine oxidase ThiO	-
ACH45O_RS26090 (ACH45O_26090)	-	5771043..5771444 (-)	402	WP_038575642.1	type IV pilin protein	-
ACH45O_RS26095 (ACH45O_26095)	-	5771458..5774529 (-)	3072	WP_397432989.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48681.10 Da
• Isoelectric Point: 7.8993

>NTDB_id=1067728 ACH45O_RS26080 WP_397432983.1 5768563..5769891(+) (pilR) [Pseudomonas chlororaphis strain ZL3]
MSPRQKVLIVDDDPGVREYLEISLGRMQHHTCSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGPLPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASIYIS
GESGSGKELVARTIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVCAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLCLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=1067728 ACH45O_RS26080 WP_397432983.1 5768563..5769891(+) (pilR) [Pseudomonas chlororaphis strain ZL3]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTCGGCAGGAT
GCAGCACCATACCTGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGGATCGACACCAGCGAACCCCGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCGTGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTACGATCCACGACCAAGGACCACGGGCCGGCCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCACTGCAGGCGGAAGTGTGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TCAACGTGATCGAGCTGGCGGTGCCACCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66	100	0.672
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457