Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ACFSN5_RS02610 Genome accession   NZ_CP172427
Coordinates   533803..534489 (+) Length   228 a.a.
NCBI ID   WP_165329206.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 528803..539489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS02585 (ACFSN5_02585) - 528819..530198 (-) 1380 WP_165209176.1 TrkH family potassium uptake protein -
  ACFSN5_RS02590 (ACFSN5_02590) rsmG 530216..530929 (-) 714 WP_165209179.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACFSN5_RS02595 (ACFSN5_02595) - 531217..531768 (+) 552 WP_165329209.1 LemA family protein -
  ACFSN5_RS02600 (ACFSN5_02600) htpX 531778..532674 (+) 897 WP_165329208.1 zinc metalloprotease HtpX -
  ACFSN5_RS02605 (ACFSN5_02605) - 533176..533712 (+) 537 WP_165329207.1 DUF177 domain-containing protein -
  ACFSN5_RS02610 (ACFSN5_02610) covR 533803..534489 (+) 687 WP_165329206.1 response regulator transcription factor Regulator
  ACFSN5_RS02615 (ACFSN5_02615) nrdR 534633..535130 (+) 498 WP_004225597.1 transcriptional regulator NrdR -
  ACFSN5_RS02620 (ACFSN5_02620) - 535117..536286 (+) 1170 WP_165329205.1 helicase DnaB -
  ACFSN5_RS02625 (ACFSN5_02625) dnaI 536287..537186 (+) 900 WP_165329204.1 primosomal protein DnaI -
  ACFSN5_RS02630 (ACFSN5_02630) der 537348..538658 (+) 1311 WP_165329203.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26341.52 Da        Isoelectric Point: 9.0323

>NTDB_id=1067662 ACFSN5_RS02610 WP_165329206.1 533803..534489(+) (covR) [Streptococcus sp. ZJ 1593]
MAKRILLIEGEKSLSRLVSLKLQEKGYQAFVSQNGRSGLKMALERDFELIFIDFKLSDRDGLKLMQDIKEVKKVPIVLMV
NREDAENLPKTDGLTDDYLIKPFAVEELLDKVDEIFQRKGLKRKPPKSNQTAYQDLIMDEASRSVIRRGEAIALTKREFA
LLSTLLRHINTVMTREELLDYVWSYSDGTVETNVVDVYVRYLRGKIDIPGHESYIQTVRGLGYVIRER

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1067662 ACFSN5_RS02610 WP_165329206.1 533803..534489(+) (covR) [Streptococcus sp. ZJ 1593]
ATGGCAAAACGCATTCTATTAATCGAAGGCGAGAAAAGTTTATCAAGGTTGGTGTCCTTGAAGTTACAGGAAAAAGGCTA
TCAAGCATTTGTTAGTCAAAATGGTCGTTCTGGTTTGAAAATGGCATTAGAAAGAGATTTTGAATTGATTTTTATTGATT
TCAAACTCTCAGATCGGGATGGCTTGAAACTCATGCAAGACATCAAGGAAGTCAAGAAGGTTCCTATTGTCTTGATGGTC
AATCGGGAAGATGCGGAAAATTTACCCAAGACAGATGGTTTGACTGATGATTATCTGATTAAGCCCTTTGCTGTGGAAGA
ACTTCTGGACAAGGTTGATGAAATTTTTCAACGCAAAGGTCTGAAGCGGAAGCCTCCTAAGTCCAATCAAACAGCTTATC
AGGATTTGATTATGGATGAGGCCAGCCGTTCGGTTATTCGCAGAGGAGAAGCCATAGCGTTGACAAAAAGAGAGTTTGCT
CTTTTGTCGACTTTATTGCGACATATCAATACGGTTATGACACGTGAGGAATTGCTGGACTATGTCTGGAGTTATAGTGA
TGGCACAGTTGAGACTAATGTTGTGGATGTTTATGTTCGTTACCTCCGTGGAAAAATTGACATTCCCGGTCATGAATCTT
ATATCCAAACTGTTCGAGGTTTGGGCTATGTCATTCGAGAACGTTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-224)

Response regulator receiver domain (Response_reg)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

52.586

100

0.535
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.522

100

0.469

Multiple sequence alignment