Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACFSN5_RS00770 Genome accession   NZ_CP172427
Coordinates   133095..134018 (+) Length   307 a.a.
NCBI ID   WP_165329445.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 128095..139018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS00750 (ACFSN5_00750) - 128333..129994 (+) 1662 WP_165329447.1 peptide ABC transporter substrate-binding protein -
  ACFSN5_RS00755 (ACFSN5_00755) - 130081..130995 (+) 915 WP_040804788.1 ABC transporter permease -
  ACFSN5_RS00760 (ACFSN5_00760) - 131007..132038 (+) 1032 WP_004228615.1 ABC transporter permease -
  ACFSN5_RS00765 (ACFSN5_00765) oppD 132049..133098 (+) 1050 WP_165329446.1 ABC transporter ATP-binding protein Regulator
  ACFSN5_RS00770 (ACFSN5_00770) amiF 133095..134018 (+) 924 WP_165329445.1 ABC transporter ATP-binding protein Regulator
  ACFSN5_RS00775 (ACFSN5_00775) - 134156..135841 (-) 1686 WP_165329444.1 MFS transporter -
  ACFSN5_RS00780 (ACFSN5_00780) - 135968..136489 (+) 522 WP_004226204.1 PadR family transcriptional regulator -
  ACFSN5_RS00785 (ACFSN5_00785) - 137253..137969 (+) 717 WP_165212405.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34533.17 Da        Isoelectric Point: 6.1330

>NTDB_id=1067646 ACFSN5_RS00770 WP_165329445.1 133095..134018(+) (amiF) [Streptococcus sp. ZJ 1593]
MTQDPKKLVQVKNVSLTFNKGKSNQVKAIDDVSFDIYEGEVFGLVGESGSGKTTIGRSILKLYDIDSGGISFNEKSVEAL
KGKDLHDFRKDAQMIFQDPQASLNGRMTIRDIIAEGLDIHHLTASKEERQKRVEELIELVGLNKDHLSRYPHEFSGGQRQ
RIGIARALAVKPKFIVADEPISALDVSIQAQVVNLMQKLQHDQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
VYNNPIHPYTKSLLSAIPEPDPERERARVPQVYDPSLEEDGQARQMHEITPGHFVYATDQEAENYKK

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1067646 ACFSN5_RS00770 WP_165329445.1 133095..134018(+) (amiF) [Streptococcus sp. ZJ 1593]
ATGACCCAAGACCCTAAAAAATTAGTCCAAGTCAAAAACGTTTCCCTGACCTTCAACAAGGGAAAATCCAACCAAGTCAA
GGCTATTGATGATGTTAGTTTTGATATCTATGAAGGTGAAGTGTTCGGTCTGGTTGGAGAATCAGGTTCAGGTAAGACGA
CTATTGGTCGCTCGATTCTTAAGCTCTATGATATTGACAGTGGTGGCATCAGTTTTAATGAGAAATCCGTTGAAGCCCTT
AAGGGTAAAGACCTGCATGACTTCCGTAAGGATGCCCAAATGATTTTCCAAGATCCACAAGCCAGTCTCAATGGTCGGAT
GACTATCCGAGATATTATTGCCGAAGGCTTGGATATCCATCATTTGACTGCAAGCAAGGAAGAGCGTCAAAAGAGAGTAG
AAGAGTTGATTGAATTAGTCGGTCTCAATAAGGACCACCTCTCTCGCTACCCGCATGAATTCTCTGGTGGTCAACGCCAG
CGGATTGGGATTGCCAGAGCTCTAGCGGTTAAACCTAAGTTTATCGTAGCCGATGAACCTATCTCTGCCTTGGATGTTTC
CATACAGGCTCAGGTGGTCAACCTTATGCAAAAACTTCAGCATGATCAAGGTCTGACCTACCTCTTTATCGCCCATGATC
TGTCCATGGTTAAGTATATTTCTGATCGTATCGGCGTGATGCACTGGGGCAAGCTCTTGGAGGTCGGTCCAGCTGATGAG
GTTTACAATAACCCCATCCATCCCTACACCAAGTCGCTTCTATCAGCCATTCCAGAACCGGATCCAGAGCGAGAACGGGC
TCGGGTGCCTCAGGTTTATGACCCAAGTCTGGAAGAAGATGGGCAAGCCCGCCAAATGCACGAAATCACCCCTGGTCACT
TTGTCTATGCGACTGACCAAGAGGCTGAAAACTATAAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.754

99.349

0.544
  amiF Streptococcus thermophilus LMG 18311

54.426

99.349

0.541
  amiF Streptococcus salivarius strain HSISS4

53.77

99.349

0.534
  oppD Streptococcus mutans UA159

43.629

84.365

0.368

Multiple sequence alignment