Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   ACFSN5_RS00765 Genome accession   NZ_CP172427
Coordinates   132049..133098 (+) Length   349 a.a.
NCBI ID   WP_165329446.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 127049..138098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS00750 (ACFSN5_00750) - 128333..129994 (+) 1662 WP_165329447.1 peptide ABC transporter substrate-binding protein -
  ACFSN5_RS00755 (ACFSN5_00755) - 130081..130995 (+) 915 WP_040804788.1 ABC transporter permease -
  ACFSN5_RS00760 (ACFSN5_00760) - 131007..132038 (+) 1032 WP_004228615.1 ABC transporter permease -
  ACFSN5_RS00765 (ACFSN5_00765) oppD 132049..133098 (+) 1050 WP_165329446.1 ABC transporter ATP-binding protein Regulator
  ACFSN5_RS00770 (ACFSN5_00770) amiF 133095..134018 (+) 924 WP_165329445.1 ABC transporter ATP-binding protein Regulator
  ACFSN5_RS00775 (ACFSN5_00775) - 134156..135841 (-) 1686 WP_165329444.1 MFS transporter -
  ACFSN5_RS00780 (ACFSN5_00780) - 135968..136489 (+) 522 WP_004226204.1 PadR family transcriptional regulator -
  ACFSN5_RS00785 (ACFSN5_00785) - 137253..137969 (+) 717 WP_165212405.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38899.08 Da        Isoelectric Point: 4.5327

>NTDB_id=1067645 ACFSN5_RS00765 WP_165329446.1 132049..133098(+) (oppD) [Streptococcus sp. ZJ 1593]
MSKEEILSVKDLHVNFHTYAGDVKAIRNVNFELYKGETLAIVGESGSGKSVTTRTLMGLSAKNAEVSGDIQFKGRNLNEL
DEKDWVSVRGNEIAMIFQDPMTSLDPTMKIWKQIAEPILIHDDEMEFDQAFEIAVDLMEKVGIPNAREHANDYPHQWSGG
MRQRAVIAIALAANPEILIADEPTTALDVTIQAQILHLMKDIQQQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGS
VDEVFYNPQHPYTWGLLGSMPTIGTESGSLQAIPGTPPDLLNPPKGDAFAARNAFALDIDHEEEPPMFKVSDSHYAATWL
LDERAPQVTPPDFIQKRWKQWQELEGRQK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1067645 ACFSN5_RS00765 WP_165329446.1 132049..133098(+) (oppD) [Streptococcus sp. ZJ 1593]
ATGTCAAAAGAAGAAATTTTAAGCGTCAAAGACCTTCATGTGAATTTCCATACCTATGCTGGCGATGTCAAGGCTATTCG
GAATGTCAACTTTGAACTCTACAAGGGTGAAACGCTAGCTATCGTTGGCGAGTCTGGTTCTGGGAAGTCTGTCACAACGC
GGACGCTCATGGGCTTGTCGGCTAAAAATGCTGAGGTCAGTGGCGATATCCAGTTTAAGGGACGTAATCTCAATGAACTG
GATGAAAAAGATTGGGTCAGCGTTCGTGGTAATGAAATTGCCATGATTTTCCAAGATCCTATGACCAGTCTGGATCCAAC
CATGAAAATTTGGAAGCAGATTGCTGAGCCCATTTTGATTCACGATGACGAAATGGAATTCGATCAAGCTTTTGAAATCG
CTGTTGATTTGATGGAAAAAGTTGGAATCCCTAATGCGCGTGAACATGCTAATGATTATCCTCATCAGTGGTCTGGAGGG
ATGCGGCAGCGGGCTGTGATTGCCATTGCCCTGGCTGCTAATCCAGAAATCCTTATTGCCGATGAACCGACGACTGCTCT
GGATGTAACGATTCAGGCTCAAATTCTGCACCTGATGAAGGATATTCAGCAGCAAACCGAGAGTTCAATTATCTTTATCA
CCCATGATTTGGGTGTCGTTGCTGGTATGGCTGATCGGGTTGCCGTGATGTATGCTGGTAAGATTGTTGAATACGGCAGT
GTTGATGAAGTTTTCTACAATCCGCAACACCCTTATACTTGGGGGCTTCTTGGTTCCATGCCAACCATAGGGACCGAGTC
TGGCAGTCTACAAGCTATTCCTGGGACACCACCGGATTTGCTCAATCCGCCTAAGGGGGATGCCTTTGCTGCTAGAAATG
CCTTTGCTCTGGATATCGATCACGAGGAAGAGCCGCCCATGTTTAAGGTATCTGATAGCCACTATGCGGCTACTTGGCTT
TTAGATGAACGAGCACCTCAGGTGACACCGCCAGACTTTATCCAAAAACGGTGGAAACAGTGGCAAGAATTAGAAGGGAG
ACAAAAATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(236-298)

ABC transporter (ABC_tran)

(27-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.736

99.713

0.785
  amiE Streptococcus salivarius strain HSISS4

55.06

96.275

0.53
  amiE Streptococcus thermophilus LMG 18311

54.762

96.275

0.527
  amiE Streptococcus thermophilus LMD-9

54.762

96.275

0.527

Multiple sequence alignment