Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACHGMI_RS18475 Genome accession   NZ_CP172417
Coordinates   3367598..3368242 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3362598..3373242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS18455 - 3363169..3363900 (-) 732 WP_017695535.1 (S)-benzoin forming benzil reductase -
  ACHGMI_RS18460 essA 3363963..3364418 (-) 456 WP_010886603.1 type VII secretion protein EssA -
  ACHGMI_RS18465 - 3364450..3365556 (-) 1107 Protein_3574 type VII secretion protein EsaA -
  ACHGMI_RS18470 comP 3365556..3367517 (+) 1962 WP_276569535.1 histidine kinase Regulator
  ACHGMI_RS18475 comA 3367598..3368242 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACHGMI_RS18480 - 3368261..3368641 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  ACHGMI_RS18485 mnhG 3368680..3369054 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  ACHGMI_RS18490 - 3369038..3369322 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACHGMI_RS18495 - 3369322..3369798 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ACHGMI_RS18500 - 3369804..3371285 (-) 1482 WP_017695527.1 Na+/H+ antiporter subunit D -
  ACHGMI_RS18505 - 3371278..3371619 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  ACHGMI_RS18510 - 3371619..3372050 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1067613 ACHGMI_RS18475 WP_003220716.1 3367598..3368242(+) (comA) [Bacillus subtilis strain AKPS2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1067613 ACHGMI_RS18475 WP_003220716.1 3367598..3368242(+) (comA) [Bacillus subtilis strain AKPS2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment