Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACHGMI_RS18370 Genome accession   NZ_CP172417
Coordinates   3350533..3351177 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3345533..3356177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS18335 - 3346725..3347156 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ACHGMI_RS18340 - 3347156..3347497 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACHGMI_RS18345 - 3347490..3348971 (+) 1482 WP_041052853.1 Na+/H+ antiporter subunit D -
  ACHGMI_RS18350 - 3348977..3349453 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ACHGMI_RS18355 - 3349453..3349737 (+) 285 WP_041052851.1 Na(+)/H(+) antiporter subunit F1 -
  ACHGMI_RS18360 mnhG 3349721..3350095 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  ACHGMI_RS18365 - 3350134..3350514 (-) 381 WP_041052848.1 hotdog fold thioesterase -
  ACHGMI_RS18370 comA 3350533..3351177 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACHGMI_RS18375 comP 3351258..3353570 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  ACHGMI_RS18380 comX 3353586..3353807 (-) 222 WP_014480704.1 competence pheromone ComX -
  ACHGMI_RS18385 - 3353809..3354672 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  ACHGMI_RS18390 degQ 3354857..3354997 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACHGMI_RS18395 - 3355219..3355281 (+) 63 Protein_3560 hypothetical protein -
  ACHGMI_RS18400 - 3355459..3355827 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1067609 ACHGMI_RS18370 WP_003220716.1 3350533..3351177(-) (comA) [Bacillus subtilis strain AKPS2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1067609 ACHGMI_RS18370 WP_003220716.1 3350533..3351177(-) (comA) [Bacillus subtilis strain AKPS2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment