Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACHZDB_RS07685 Genome accession   NZ_CP172405
Coordinates   1731526..1732044 (-) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain LB503     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726526..1737044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS07660 (ACHZDB_07660) rimM 1726582..1727130 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  ACHZDB_RS07665 (ACHZDB_07665) rpsP 1727158..1727406 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  ACHZDB_RS07670 (ACHZDB_07670) ffh 1727617..1728999 (-) 1383 WP_399425127.1 signal recognition particle protein -
  ACHZDB_RS07675 (ACHZDB_07675) - 1729213..1730007 (+) 795 WP_005426660.1 inner membrane protein YpjD -
  ACHZDB_RS07680 (ACHZDB_07680) - 1730163..1731437 (+) 1275 WP_005426658.1 HlyC/CorC family transporter -
  ACHZDB_RS07685 (ACHZDB_07685) luxS 1731526..1732044 (-) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  ACHZDB_RS07690 (ACHZDB_07690) - 1732134..1732739 (-) 606 WP_005438049.1 hypothetical protein -
  ACHZDB_RS07695 (ACHZDB_07695) gshA 1732759..1734327 (-) 1569 WP_399425128.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=1067435 ACHZDB_RS07685 WP_010643243.1 1731526..1732044(-) (luxS) [Vibrio campbellii strain LB503]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1067435 ACHZDB_RS07685 WP_010643243.1 1731526..1732044(-) (luxS) [Vibrio campbellii strain LB503]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCAGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCCGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTAGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment