Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACHZDB_RS07580 Genome accession   NZ_CP172405
Coordinates   1708608..1709225 (+) Length   205 a.a.
NCBI ID   WP_005428669.1    Uniprot ID   A0AAQ2XXV5
Organism   Vibrio campbellii strain LB503     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703608..1714225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS07560 (ACHZDB_07560) - 1703890..1704807 (-) 918 WP_005531730.1 ABC transporter ATP-binding protein -
  ACHZDB_RS07565 (ACHZDB_07565) - 1705047..1706717 (-) 1671 WP_038891985.1 SulP family inorganic anion transporter -
  ACHZDB_RS07570 (ACHZDB_07570) can 1707001..1707669 (+) 669 WP_005531727.1 carbonate dehydratase -
  ACHZDB_RS07575 (ACHZDB_07575) hpt 1707756..1708286 (-) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  ACHZDB_RS07580 (ACHZDB_07580) opaR 1708608..1709225 (+) 618 WP_005428669.1 transcriptional regulator OpaR Regulator
  ACHZDB_RS07585 (ACHZDB_07585) lpdA 1709663..1711093 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  ACHZDB_RS07590 (ACHZDB_07590) aceF 1711337..1713235 (-) 1899 WP_399425122.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=1067430 ACHZDB_RS07580 WP_005428669.1 1708608..1709225(+) (opaR) [Vibrio campbellii strain LB503]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1067430 ACHZDB_RS07580 WP_005428669.1 1708608..1709225(+) (opaR) [Vibrio campbellii strain LB503]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment