Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACH6F1_RS03150 Genome accession   NZ_CP172397
Coordinates   605573..606343 (+) Length   256 a.a.
NCBI ID   WP_002792199.1    Uniprot ID   A0A3K5JQQ7
Organism   Campylobacter coli strain YH506     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 600573..611343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6F1_RS03135 (ACH6F1_03135) - 601472..603406 (-) 1935 WP_395941651.1 RNB domain-containing ribonuclease -
  ACH6F1_RS03140 (ACH6F1_03140) ilvC 603527..604549 (+) 1023 WP_057044782.1 ketol-acid reductoisomerase -
  ACH6F1_RS03145 (ACH6F1_03145) - 604552..605583 (+) 1032 WP_395941652.1 divergent polysaccharide deacetylase family protein -
  ACH6F1_RS03150 (ACH6F1_03150) dprA 605573..606343 (+) 771 WP_002792199.1 DNA-processing protein DprA Machinery gene
  ACH6F1_RS03155 (ACH6F1_03155) ruvX 606340..606720 (+) 381 WP_002792200.1 Holliday junction resolvase RuvX -
  ACH6F1_RS03160 (ACH6F1_03160) - 606731..607585 (+) 855 WP_370658866.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6F1_RS03165 (ACH6F1_03165) msrA 607807..608307 (-) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6F1_RS03170 (ACH6F1_03170) ppa 608355..608873 (-) 519 WP_002776378.1 inorganic diphosphatase -
  ACH6F1_RS03175 (ACH6F1_03175) - 608884..609459 (-) 576 WP_002781658.1 adenylate kinase -
  ACH6F1_RS03180 (ACH6F1_03180) aspS 609456..611207 (-) 1752 WP_002825344.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28775.19 Da        Isoelectric Point: 5.2497

>NTDB_id=1067301 ACH6F1_RS03150 WP_002792199.1 605573..606343(+) (dprA) [Campylobacter coli strain YH506]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSAYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESHYKPKPYDFLLRNRLIIALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1067301 ACH6F1_RS03150 WP_002792199.1 605573..606343(+) (dprA) [Campylobacter coli strain YH506]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCGCTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCCACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTATCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTGCCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGTGTGAGTGTGGATGAAGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAA
CTTGAAGGAAAAATTTCCATAGAGGGTCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JQQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

48.333

93.75

0.453

Multiple sequence alignment